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Table 3 Validated causal genes a

From: Prioritization of candidate genes in QTL regions based on associations between traits and biological processes

Gene Trait Overrepresented biological processes involved
LOC_Os01g10840 plant height intracellular protein kinase cascade; pattern specification process; xylem and phloem pattern formation; signal transduction by phosphorylation
LOC_Os01g58420 spikelet number cellular response to ethylene stimulus
LOC_Os01g66120 plant height positive regulation of macromolecule biosynthetic process/nitrogen compound metabolic process/gene expression
LOC_Os02g43790 spikelet number cellular response to ethylene stimulus
LOC_Os03g03370 relative water content microgametogenesis
LOC_Os08g06380 plant height two-component signal transduction system (phosphorelay); ethylene mediated signaling pathway; cellular response to ethylene stimulus
LOC_Os09g26400 chlorophyll content NADPH regeneration; nicotinamide nucleotide metabolic process
LOC_Os11g08210 plant height positive regulation of macromolecule biosynthetic process/nitrogen compound metabolic process/gene expression
  1. aGenes prioritized for traits based on overrepresentation of biological processes in QTL regions for the trait for which validation is available based on literature results [59].