Figure 5From: Evaluation and integration of functional annotation pipelines for newly sequenced organisms: the potato genome as a test caseValidation of annotations based on gold standard. For each annotation method (i.e., a pipeline and a variant of the ensemble algorithm) the F-measure of the gold standard validation is shown on PGSC gene models, see Methods for a full description of the scores. A score of 1 means perfect agreement between an annotation method and the gold standard. A score close to zero means poor concordance with the gold standard. (A) F-measure of the BP annotations. (B) F-measure of the MF annotations. The results show that both in BP and MF the ensemble algorithm improves the results considerably when used with k is 1 or 2.Back to article page