Table 1 Browning-related genes induced or repressed in the affected inner cortex of ‘Braeburn’ apples

MDP0000192364

Pyruvate dehydrogenase

Link glycolysis to TCA

<0.001

14.53

29.39

2.02

MDP0000129305

Phosphoglycerate mutase

Glycolysis/dually targeted

0.016

0.91

1.80

1.98

MDP0000295823

Probable lactate/malate dehydrogenase

Fermentation

<0.001

20.06

30.24

1.51

MDP0000622920

Phosphoenolpyruvate carboxylase

TCA/org transformation

0.004

8.35

5.47

−1.53

MDP0000198410

Aconitate hydratase

TCA/org transformation

0.016

19.75

11.72

−1.69

MDP0000798440

Cytochrome c biogenesis fn

Mitochondrial electron transport/ATP synthesis

0.014

2.67

1.52

−1.76

MDP0000249250

Phospholipase a2

Lipid degradation

0.004

0.49

4.25

8.65

MDP0000576682*

Butyrate-- ligase peroxisomal-like

FA synthesis and FA elongation

0.01

0.20

1.30

6.63

MDP0000794484

Alpha/beta-Hydrolase

Lipid degradation

0.003

2.60

6.33

2.43

MDP0000833444

Diacylglycerol kinase-like

Phospholipid synthesis

0.018

2.14

5.15

2.41

MDP0000309977

Acyl-coenzyme a thioesterase

Lipid degradation/beta-oxidation

0.004

0.95

2.23

2.36

MDP0000849585

Alpha/beta-Hydrolase

Lipid degradation

0.009

2.85

5.69

2.00

MDP0000283158

Alpha beta-hydrolase, lipase

Lipid degradation

<0.001

4.51

7.92

1.76

MDP0000273425

Diacylglycerol kinase-like

Phospholipid synthesis

0.04

4.44

2.73

−1.63

MDP0000615196

Glutaredoxin family protein

Redox state

<0.001

0.32

1.18

3.64

MDP0000146621

Nadh-cytochrome b5 reductase

Redox state

0.004

4.39

8.03

1.83

MDP0000196554

Chorismate mutase/APX

Aminoacid synthesis/ascorbate metabolism

<0.001

11.63

19.96

1.72

MDP0000251669

Thioredoxin

Redox state

0.019

18.00

28.15

1.56

MDP0000252195

Ferredoxin-thioredoxin reductase

Redox state

<0.001

10.84

16.70

1.54

MDP0000520089*

Desacetoxyvindoline 4-

Ascorbate and glutathione metabolism

0.041

5.41

3.53

−1.53

MDP0000181414

Alpha-ketoglutarate-dependent dioxygenase

Redox state

0.004

6.69

4.16

−1.61

MDP0000260512

4-coumarate: ligase

Phenylpropanoids

0.001

0.16

1.05

6.71

MDP0000576682*

Butyrate-- ligase peroxisomal-like

Sulfur-containing glucosinolates synthesis

0.01

0.20

1.30

6.63

MDP0000206680

Reticuline oxidase-like

Alkaloid-like

<0.001

1.48

5.13

3.45

MDP0000702557*

UDP-glucuronosyl/UDP-glucosyltransferase

Flavonoids/flavonols synthesis

0.001

30.37

48.24

1.59

MDP0000520089*

Desacetoxyvindoline 4-

Sulfur-containing glucosinolates synthesis

0.041

5.41

3.53

−1.53

MDP0000610961

L-ascorbate oxidase

Cell wall modifications

<0.001

30.35

132.43

4.36

MDP0000873667

Xyloglucan endotransglucosylase/hydrolase

Cell wall modification

<0.001

52.59

229.40

4.36

MDP0000904458

Fasciclin-like arabinogalactan

Cell wall proteins

<0.001

193.78

525.70

2.71

MDP0000723275

Arabinose 5-phosphate isomerase

Cell wall precursor synthesis

<0.001

18.80

32.91

1.75

MDP0000289339

Cellulose synthase

Cell wall cellulose synthesis

0.013

1.90

1.03

−1.85

MDP0000836165

Pectin methylesterase inhibitor

Cell wall pectin esterases

0.036

2.42

1.21

−2.00

MDP0000616949

Pectin methylesterase inhibitor

Cell wall pectin esterases

0.01

1.04

0.44

−2.37