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Figure 5 | BMC Plant Biology

Figure 5

From: The chickpea genomic web resource: visualization and analysis of the desi-type Cicer arietinum nuclear genome for comparative exploration of legumes

Figure 5

Typical display of the chickpea genome browser in the region of the first LG. Four main areas can be seen on the top left side of the upper panel panel, namely, Search, Overview, Region and Details. The topmost ‘Search’ section identifies the exact genomic range displayed in the browser (see ‘Landmark’ textbox on top left corner). The area highlighted in sky-blue shades in both of next two sections, namely, ‘Overview’ and ‘Region’, is expanded in the remaining browser view. Accordingly, the current example (‘Details’ section) represents a 10 kbp stretch within 3 Mbp region of CA LG 1. The 3 Mbp region has about 11 gene models (see yellow bands in ‘Region’ Section), of which only two lie within the expanded Details section (see yellow bands in Annotation track). Annotation of the gene models can be seen by clicking the annotation bands in the expanded section, in the form of a pop-up box, as shown here. In this image, seven genomic tracks have been toggled on, including retrotransposons, nucleosome states, and the transcriptome. Users can select additional tracks from over forty-eight options in the present CGWR build, as shown in the lower left panel.

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