Skip to main content

Table 1 Genome-wide significant association signals of rice blast resistance using the EMMAX algorithm

From: Genome-wide association study of blast resistance in indica rice

Strain

Chromosome

Position

Allele

MAFa

P-value

Known loci

CH102

1

5686415

T, A

0.068

6.14E-09

 

CH102

8

3774060

C, T

0.063

4.36E-10

 

CH102

9

10663921

G, A

0.053

1.65E-09

 

CH102

11

21585376

G, A

0.057

2.97E-09

 

CH149

2

24129162

C, T

0.060

1.04E-09

 

CH149

4

1193240

C, T

0.120

1.51E-09

 

CH149

4

24398518

A, C

0.065

5.06E-09

 

CH149

9

12562701

C, T

0.078

1.30E-10

 

CH149

11

30618466

G, A

0.102

9.94E-09

Pif[29]

CH149

12

13690289

C, A

0.060

7.53E-15

 

CH171

4

3571241

G, A

0.068

6.28E-11

 

CH171

5

22378428

A, T

0.063

3.27E-10

 

CH171

6

22777049

C, T

0.057

2.05E-09

 

CH171

7

1181446

A, G

0.052

2.95E-11

 

CH171

11

16829017

A, G

0.122

8.00E-09

 

CH171

11

25107794

T, A

0.065

3.09E-10

 

CH171

12

18051954

C, T

0.058

2.46E-09

 

CH171

12

23040661

G, A

0.089

2.33E-09

 

CH172

12

10833734

C, A

0.469

5.33E-10

 

CH172

12

12959480

G, A

0.467

1.98E-09

 

CH182

3

1170958

A, G

0.060

7.92E-09

 

CH182

7

19794146

T, A

0.070

1.16E-09

 

CH182

8

5587272

C, T

0.055

3.77E-09

 

CH182

8

25225491

C, T

0.055

3.87E-09

 

CH182

11

27068156

C, T

0.300

5.36E-09

Pik[28]

CH182

11

30606558

C, T

0.060

2.94E-11

Pif[29]

CH182

12

17934412

A, G

0.076

2.85E-09

 

CH186

12

13032951

G, A

0.433

4.25E-13

 

CH212

7

1616159

C, T

0.172

2.40E-09

 

CH362

11

6526998

G, A

0.240

1.72E-17

Pia[27]

  1. aMAF: minor allele frequency.