Sub-networks of genes differentially regulated in response to full-length CaLCuV AC2 protein. The diagrams illustrate sub-networks of genes that may be co-regulated in response to to both SCTV C2 and asSnRK1.2 at two dpi. (A) Network of genes up-regulated at two dpi. (B) and (C) Networks of genes down-regulated at two dpi. The sub-networks were selected from the network analysis presented in (Additional file 13: Figure S3 and Additional file 14: S4). A list of the connections between genes in the networks (edges) is given in (Additional file 15: Table S11).