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Table 3 Differentially expressed secondary cell wall genes

From: Flavonoid supplementation affects the expression of genes involved in cell wall formation and lignification metabolism and increases sugar content and saccharification in the fast-growing eucalyptus hybrid E. urophylla x E. grandis

 

FPKM

Gene ID

Annotation

CT

CH

NAR

CHSTOP

NARSTOP

Eucgr.C03199.1

SUS4

1,532.75

66.91*

100.38*

132.04

213.15

Eucgr.C01715.1

SPS1F

3.32

63.28*

54.72

35.80*

28.00

Eucgr.F00464.1

SUT4

28.18

85.70

85.04

82.49*

36.89

Eucgr.D01765.2

CSLG3

0.07

3.26

6.28*

7.07*

1.24

Eucgr.F04010.1

CSLC05

7.51

0.11*

0.35

0.47*

3.06

Eucgr.J00420.1

CSLA2

41.08

2.63*

5.07*

5.87*

25.59

Eucgr.E00226.1

CSLD3

10.13

0.53

0.78

0.68

2.11

Eucgr.E00821.1

CSLG2

3.07

0.38*

0.35

0.78*

3.03

Eucgr.J02497.1

AMR1

1.00

5.25

6.14

6.11*

2.68

Eucgr.J02407.1

MUR1

74.28

18.89

17.82

19.95*

38.28

Eucgr.B03204.1

MUR2

13.62

55.51

54.92

47.91*

32.70

Eucgr.J01663.1

XTH5

97.41

1.21*

1.87*

3.31*

75.71

Eucgr.B03348.1

XTH33

26.89

0.21

0.15*

0.07*

9.47

Eucgr.K00883.2

XTH9

607.60

16.06*

29.74

37.61*

288.85

Eucgr.C00184.1

XTH23

45.26

0.45

0.72*

0.22*

37.20

Eucgr.H02634.1

XTH16

386.73

21.78*

47.14

72.69

396.09

Eucgr.D01294.1

XTH8

10.82

1.01

1.54

1.66*

7.36

Eucgr.J00827.1

GSL12

0.04

0.90*

1.56*

0.98*

0.76*

Eucgr.A02002.1

GSL7

0.20

1.24

2.13

1.38*

0.79

Eucgr.A02008.1

GSL7

0.16

1.07

1.89

1.66*

0.83

Eucgr.K02988.2

GH

16.20

90.51*

69.09*

53.94

47.27*

Eucgr.H00494.1

PWD

6.13

20.24

26.24*

27.22

7.21

Eucgr.H03767.1

BAM9

39.25

225.21

235.09*

217.12

115.07

Eucgr.E00460.1

TPS

0.08

5.75*

6.21*

4.26

0.34

Eucgr.K00387.1

SS

9.88

66.76*

54.46*

39.19

19.93

Eucgr.C04266.1

RafS

26.09

1,317.97*

1007.17

544.49

193.24

Eucgr.K03553.1

STS

0.04

4.11*

4.59*

2.83*

6.87*

Eucgr.H00997.1

STS

0.81

37.45*

29.83*

17.09*

7.06*

Eucgr.K03563.1

GoSL1

0.23

4.48

11.12*

12.00

8.48*

Eucgr.L00249.1

GoSL2

0.34

280.16*

135.36*

52.37*

1.25

Eucgr.L00243.1

GoSL2

0.02

29.83*

19.77*

9.75*

1.37*

Eucgr.L00251.1

GoSL2

0.21

325.56*

149.21*

61.46*

3.38

Eucgr.L03245.1

GoSL2

0.07

190.81*

124.71*

44.86*

2.79*

Eucgr.L00240.1

GoSL2

0.02

34.50*

22.77*

10.27*

0.66

Eucgr.L00248.1

GoSL2

0.17

162.07*

86.93*

32.28*

0.69

Eucgr.L03244.1

GoSL2

0.12

279.83*

137.40*

63.66*

2.99*

Eucgr.L00235.1

GoSL2

0.04

73.19*

38.88*

15.60*

0.03

Eucgr.L00245.1

GoSL2

1.83

287.87*

164.66

80.81*

5.28

Eucgr.F01661.1

Invertase

0.15

2.82*

2.16

2.39*

1.33

Eucgr.J00457.2

Invertase

5.69

47.20*

42.83

33.08*

18.78

Eucgr.G01751.1

Invertase

4.83

0.23*

0.42

1.17*

2.23

Eucgr.A02888.1

Invertase

7.36

0.04*

0.08*

0.08*

1.55

  1. FPKM -fragments per kilobase of exon per million fragments mapped. CT - control; CH - prolonged naringenin-chalcone supp; NAR - prolonged naringenin supp; CHSTOP- short-term naringenin-chalcone supp; NARSTOP - short-term naringenin sup *Denotes differential expression.
  2. Abbreviations: Sus4 sucrose synthase 4, SPS1F sucrose phosphate synthase 1 F, SUT4 sucrose transporter 4, CSLG3 cellulose synthase like G3, CSLD3 cellulose synthase-like D3, CSLC05 Cellulose-synthase-like C5, CSLA2 cellulose synthase-like A02, CSLG2 cellulose synthase like G2, CSLG3 cellulose synthase like G3, CESA3 cellulose synthase family protein, AMR1 ascorbic acid mannose pathway regulator 1, MUR1 GDP-mannose 4,6 dehydratase 2, MUR2 fucosyltransferase 1, XTH5 xyloglucan endotransglucosylase/hydrolase 5, XTH33 xyloglucosyl transferase 33, XTH9 xyloglucan endotransglucosylase/hydrolase 9, XTH23 xyloglucan endotransglycosylase 6, XTH16 xyloglucan endotransglucosylase/hydrolase 16, XTH8 xyloglucan endotransglucosylase/hydrolase 8, GSL12 glucan synthase-like 12, GSL7 glucan synthase-like 7, GH glycoside hydrolase, PWD phosphoglucan water dikinases, BAM9 beta-amylase 9, TPS trehalose-6-phosphate synthase, SS starch synthase, Rafs raafinose synthase, STS stachyose synthase, GoSL1 galactinol synthase 1, GoSL2 galactinol synthase 2.
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BMC Plant Biology

ISSN: 1471-2229

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