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Table 2 Differentially expressed phenylpropanoid-related genes

From: Flavonoid supplementation affects the expression of genes involved in cell wall formation and lignification metabolism and increases sugar content and saccharification in the fast-growing eucalyptus hybrid E. urophylla x E. grandis

 

FPKM

Gene ID

Annotation

CT

CH

NAR

CHSTOP

NARSTOP

Eucgr.C00859.1

U91A1

0.00

1.60*

0.83

0.28

0.00

Eucgr.K00903.1

AAT

0.38

3.91

4.61*

3.45

1.26

Eucgr.K00901.1

AAT

0.83

0.03*

0.98

1.18

1.51

Eucgr.E01250.1

PRR1

38.77

3.72*

4.68*

7.66

21.15

Eucgr.B03781.1

AA

24.04

0.04*

0.86

1.39

9.77

Eucgr.D02454.1

DFR

0.05

3.10*

2.73*

1.32

0.48

Eucgr.G02325.1

DFR

2.51

28.24*

20.16*

21.06

9.55

Eucgr.F04163.1

LAC14

6.22

0.15

0.32*

0.57

1.82

Eucgr.F02646.1

LAC14

1.99

0.00*

0.02*

0.06*

0.44

Eucgr.F04162.1

LAC14

1.95

0.09

0.04*

0.06

0.72

Eucgr.H04937.1

LAC14

13.67

0.02*

0.15*

0.21

4.66

Eucgr.F04160.1

LAC14

17.17

0.04*

0.25*

0.26*

3.08

Eucgr.F02674.1

LAC14

7.13

0.28

0.27*

0.42

2.90

Eucgr.H04936.1

LAC14

8.51

0.04*

0.03*

0.08

2.50

Eucgr.B02796.1

LAC4

12.04

0.28*

1.95

3.31

5.69

Eucgr.K00957.1

ATOMT1

1.36

17.54

17.19*

10.55

15.16

Eucgr.A01877.1

OMT-like

0.00

0.31

0.79

1.75*

0.22

Eucgr.J00363.1

HCT

88.68

3.76*

16.43

29.57

53.35

Eucgr.B00137.1

4CL

12.31

1.83

2.50*

4.21

6.24

Eucgr.E00270.1

CCR

30.29

3.21

3.29*

4.03

8.00

Eucgr.G01350.2

CAD5

23.73

146.29*

126.30*

144.55

62.96

Eucgr.E01110.2

CAD1

4.34

59.21

49.17*

51.45

27.12

  1. FPKM -fragments per kilobase of exon per million fragments mapped. CT - control; CH - prolonged naringenin-chalcone supp; NAR - prolonged naringenin supp; CHSTOP- short-term naringenin-chalcone supp; NARSTOP - short-term naringenin sup *Denotes differential expression.
  2. Abbreviations: U91A1 UDP-Glycosyltransferase superfamily protein, AAT HXXXD-type acyl-transferase family protein, PRR1 pinoresinol reductase, AA Plant L-ascorbate oxidase, DFR Dihydroflavonol-4-reductase, LAC14 laccase 14, LAC4 laccase 4, ATOMT1 O-methyltransferase 1, OMT-like O-methyltransferase family protein, HCT hydroxycinnamoyl-CoA shikimate transferase, 4 CL 4 coumarate CoA ligase, CCR cinnamoyl-CoA reductase, CAD cinnamyl alcohol dehydrogenase.