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Table 1 Gene ID, FPKM values and annotation of the 36 genes that found to be differentially expressed in all tested conditions

From: Flavonoid supplementation affects the expression of genes involved in cell wall formation and lignification metabolism and increases sugar content and saccharification in the fast-growing eucalyptus hybrid E. urophylla x E. grandis

 

FPKM

Gene ID

Annotation

CT

CH

NAR

CHSTOP

NARSTOP

Eucgr.F04479.1

HSP20

0.12

35.55

40.44

23.84

57.92

Eucgr.K02389.1

Unknown

0.04

13.69

10.18

9.89

26.99

Eucgr.K02399.1

Unknown

0.08

18.09

18.67

19.48

53.82

Eucgr.G01188.2

EGY3

2.78

45.78

41.56

33.40

76.35

Eucgr.J01979.1

HSP18.2

0.34

17.61

19.94

14.63

27.21

Eucgr.K02410.1

Unknown

0.13

14.27

10.66

12.52

29.61

Eucgr.J01980.1

HSP18.2

0.02

12.20

11.59

9.15

26.39

Eucgr.L02233.1

no hit

1.29

41.47

38.15

29.24

118.40

Eucgr.F02898.1

HSP20

2.76

525.99

343.17

280.68

342.59

Eucgr.J01985.1

HSP18.2

0.31

22.25

16.62

13.21

33.33

Eucgr.K03553.1

STS

0.04

4.11

4.59

2.83

6.87

Eucgr.L03261.1

HSP18.2

1.44

47.41

27.81

19,98

75,67

Eucgr.C03449.1

HSFA2

0.29

14.55

12.98

14.36

18.58

Eucgr.C00684.1

HSP17.6II

2.00

341.30

299.30

243.65

272.90

Eucgr.K02384.1

unknown

0.07

14.56

10.59

10.60

27.23

Eucgr.J01969.1

HSP20

4.89

192.23

134.53

103.09

310.44

Eucgr.K03472.1

ARATH

0.07

109.57

84.15

62.04

20.94

Eucgr.H04513.1

HSP70

0.23

15.72

18.79

11.56

21.62

Eucgr.A00595.1

PEBP

0.10

81.17

76.66

57.33

98.83

Eucgr.E02421.1

Unknown

0.19

260.04

220.12

119.63

51.05

Eucgr.H04692.1

HSP21

2.97

83.31

59.57

43.11

313.22

Eucgr.G02440.1

UGT73B2

0.00

5.46

5.80

3.33

4.06

Eucgr.G02259.1

UGT73B3

0.00

2.73

2.14

1.18

3.10

Eucgr.J01959.1

HSP18.2

3.19

142.90

89.76

58.22

148.21

Eucgr.K00295.1

HSP90.1

2.11

46.13

38.25

35.52

62.69

Eucgr.A01833.1

AAC3

0.13

32.00

24.43

15.08

10.47

Eucgr.C03071.1

HSP17.6II

3.64

517.08

509.51

451.66

324.54

Eucgr.B03843.1

No hit

1.45

93.17

63.39

67.61

20.77

Eucgr.C03320.1

DUF1677

0.38

24.39

18.22

14.01

9.78

Eucgr.B00176.2

PIMT2

3.86

153.25

109.01

82.97

57.39

Eucgr.J02588.1

No hit

3.20

225.90

182.76

194.01

130.04

Eucgr.C00690.1

HSP17.6II

2.48

563.68

498.40

514.67

458.94

Eucgr.K00237.1

PEBP

0.04

115.83

64.41

61.47

11.49

Eucgr.F03196.1

GSTU25

1.43

292.73

240.63

168.71

38.29

Eucgr.I02136.1

HSP20

1.68

226.73

147.43

90.02

259.35

Eucgr.H04427.1

MEE32

49.92

0.52

0.85

1.32

13.93

  1. A total of 36 genes were differentially expressed in all four conditions. FPKM -fragments per kilobase of exon per million fragments mapped. CT - control; CH - prolonged naringenin-chalcone supp; NAR - prolonged naringenin supp; CHSTOP- short-term naringenin-chalcone supp; NARSTOP - short-term naringenin supp.
  2. Abbreviations: HSP20 HSP20-like chaperone superfamily protein, unknown unknown protein, EGY3 ethylene-dependent gravitropism-deficient and yellow-green-like 3, HSP18.2 heat shock protein 18.2, HSP20 HSP20-like chaperones superfamily protein, STS stachyose synthase, HSFA2 heat shock transcription factor A2, HSP17.6II 17.6 kDa class II heat shock protein, ARATH Adenine nucleotide alpha hydrolases-like superfamily protein, HSP70 BIP1heat shock protein 70 family protein, PEBP phosphatidylethanolamine-binding protein family protein, HSP21 heat shock protein 21, UGT73B2 UDP-glucosyltransferase 73B2, UGT73B3UDP glucosyl transferase 73B3, HSP90.1 heat shock protein 90.1, AAC3 ADP/ATP carrier 3, DUF1677 protein of unknown function, PIMT2 protein-l-isoaspartate methyltransferase 2, GSTU25 glutathione S-transferase TAU 25, MEE32 dehydroquinate dehydratase, putative/shikimate dehydrogenase.
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BMC Plant Biology

ISSN: 1471-2229

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