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Table 1 The general information of rice XYLP genes

From: Identification, characterization, and transcription analysis of xylogen-like arabinogalactan proteins in rice (Oryza sativa L.)

Gene a

Subfamily b

RGAP locus c

RAP-DB locus d

Chromosome location e

Size(aa) f

Signal g

GPI h

FL-cDNA i

EST j

MI k

MPSS l

OsLTPL1

Clade A

LOC_Os03g26820

Os03g0385400

chr03:15307624..15309776

178

√

√

√

√

√

√

OsXYLP2

Clade A

LOC_Os03g26800

Os03g0385100

chr03:15300737..15301156

139

√

-

-

-

-

√

OsXYLP3

Clade A

LOC_Os07g30590

Os07g0489000

chr07:18102558..18103713

170

√

√

√

√

√

√

OsXYLP4

Clade A

LOC_Os07g43290

Os07g0625800

chr07:25920699..25922871

177

√

√

√

√

√

√

OsXYLP5

Clade A

LOC_Os03g09230

Os03g0192600

chr03:4820699..4822659

214

√

√

√

√

√

√

OsXYLP6

Clade B

LOC_Os03g20760

Os03g0323900

chr03:11751959..11753399

199

√

√

√

√

√

-

OsXYLP7

Clade B

LOC_Os05g41030

Os05g0489200

chr05:24045555..24047844

210

√

√

√

√

√

√

OsXYLP8

Clade B

LOC_Os01g59870

Os01g0814100

chr01:34626255..34628601

187

√

√

√

√

√

√

OsXYLP9

Clade C

LOC_Os07g07790

Os07g0174400

chr07:3910661..3911056

188

√

√

-

√

√

√

OsXYLP10

Clade C

LOC_Os07g07860

Os07g0174900

chr07:3947968..3949371

171

√

√

-

√

√

√

OsXYLP11

Clade C

LOC_Os03g57990

Os03g0794000

chr03:33028009..33029105

189

√

√

-

√

√

√

OsXYLP12

Clade C

LOC_Os07g07870

Os07g0175000

chr07:3950662..3951180

181

√

√

-

-

√

√

OsXYLP13

Clade C

LOC_Os03g57970

Os03g0793800

chr03:33023016..33023942

177

√

√

√

√

√

√

OsXYLP14

Clade C

LOC_Os07g07930

Os07g0175600

chr07:3980211..3981196

170

√

√

√

√

√

√

OsXYLP15

Clade C

LOC_Os04g38840

Os04g0462200

chr04:23093153..2309406

200

√

√

√

√

√

-

OsXYLP16

Clade D

LOC_Os07g09970

Os07g0198300

chr07:5313828..5318057

207

√

√

√

√

√

√

OsXYLP17

Clade D

LOC_Os03g58940

Os03g0804200

chr03:33563702..33566613

195

√

√

√

√

√

√

OsXYLP18

Clade D

LOC_Os03g07100

Os03g0167000

chr03:3626392..3628578

187

√

√

√

√

√

√

OsXYLP19

Clade D

LOC_Os06g47200

Os06g0686400

chr06:28617447..28620310

150

√

√

√

√

√

√

OsXYLP20

Clade D

LOC_Os03g46150

Os03g0664400

chr03:26096042..26096992

243

√

√

√

√

√

√

OsXYLP21

Clade D

LOC_Os08g42040

Os08g0532800

chr08:26554159..26557021

179

√

√

√

√

√

√

  1. aSystematic designation given to rice XYLPs.
  2. bOsXYLPs are divided into four clades according to the sequence homology of their protein backbones.
  3. cand dLocus numbers assigned by RGAP (Rice Genome Annotation Project, http://rice.plantbiology.msu.edu/) and RAP-DB (Rice Annotation Project Database, http://rapdb.dna.affrc.go.jp/), which can be converted by ID converter (http://rapdb.dna.affrc.go.jp/tools/converter/).
  4. eChromosomal localization of rice XYLP genes.
  5. fLength of the open reading frame in amino acids.
  6. gN-terminal signal sequence predicted by SignalP 3.0 (http://www.cbs.dtu.dk/services/SignalP/).
  7. hGPI anchor signal predicted by big-PI (http://mendel.imp.ac.at/gpi/plant_server.html).
  8. i ~ lFull-length cDNA; Expressed sequence tag profiles; microarray data; massively parallel signature sequencing.
  9. √, exist; −, not exist.
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BMC Plant Biology

ISSN: 1471-2229

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