Skip to main content
Figure 4 | BMC Plant Biology

Figure 4

From: Identification of salt gland-associated genes and characterization of a dehydrin from the salt secretor mangrove Avicennia officinalis

Figure 4

Classification of AoDHN1 into Group II LEA protein based on sequence alignment and phylogenetic analysis. (A) Alignment of AoDHN1 and AoDHN2 protein sequences with dehydrins from other plant species. The shaded region shows the conserved motif YSK2 (http://www.ch.embnet.org/software/BOX_form.html). (B) Conserved sequence motifs identified from AoDHN1 using MEME web-tool (http://meme.nbcr.net/meme/). Amino acid pattern that occurs repeatedly in YSK2 family dehydrins are represented in position-dependent manner. (C) The phylogenetic relationship of AoDHN1 with group II LEA proteins of different species is represented in rooted dendrogram. It was constructed using Phylogeny.fr web-tool (http://phylogeny.lirmm.fr/phylo_cgi/simple_phylogeny.cgi) by the approximate likelihood method based on a complete protein sequence alignment of different dehydrins and the approximate likelihood-ratio test. The branch support values are shown at the nodes as percentage values and scale bar indicates the branch lengths. The gi numbers for the sequences are: |gb|KM652423| AoDHN1 [Avicennia officinalis]; gi|157497151|gb|ABV58322.1| dehydrin [Avicennia marina]; gi|349844874|gb|AEQ19906.1| dehydrin 4 [Vitis yeshanensis]; gi|225428392|ref|XP_002283605.1| PREDICTED: late embryogenesis abundant protein-like [Vitis vinifera]; gi|353685443|gb|AER13140.1| DHN2 [Corylus mandshurica]; gi|307776652|gb|ADN93460.1| dehydrin 2 [Corylus heterophylla]; gi|314998614|gb|ADT65201.1| dehydrin [Jatropha curcas]; gi|449457626|ref|XP_004146549.1| PREDICTED: dehydrin Rab18-like [Cucumis sativus]; gi|442022395|gb|AGC51773.1| dehydrin protein [Manihot esculenta]; gi|34539778|gb|AAQ74768.1| dehydrin [Brassica napus]; gi|657980608|ref|XP_008382297.1| PREDICTED: late embryogenesis abundant protein [Malus domestica]; gi|57506540|dbj|BAD86644.1| dehydrin protein [Daucus carota]; gi|15239373|ref|NP_201441.1| dehydrin Rab18 [Arabidopsis thaliana]; gi|472278804|gb|AGI37442.1| dehydrin 1 [Rhododendron catawbiense]; gi|18076154|emb|CAC80717.1| putative dehydrin [Tithonia rotundifolia]; gi|595807384|ref|XP_007202596.1| hypothetical protein PRUPE_ppa011637mg [Prunus persica]; gi|297794373|ref|XP_002865071.1| hypothetical protein ARALYDRAFT_496967 [Arabidopsis lyrata subsp. lyrata]; gi|19032422|gb|AAL83427.1|AF345989_1 48 kDa dehydrin-like protein [Cornus sericea]; gi|657948498|ref|XP_008338082.1| PREDICTED: dehydrin Xero 1-like [Malus domestica]; gi|129562715|gb|ABO31098.1| late embryogenesis abundant protein [Lindernia brevidens]; gi|46020012|dbj|BAD13498.1| dehydrin [Nicotiana tabacum]; gi|460373256|ref|XP_004232437.1| PREDICTED: desiccation-related protein clone PCC6-19-like isoform 2 [Solanum lycopersicum].

Back to article page