Table 4 Relative synonymous codon usage for 79 distinct chloroplast protein-coding genes in N. nucifera
Codon | Count 1 | RSCU 2 | Codon | Count | RSCU | Codon | Count | RSCU | Codon | Count | RSCU |
|---|---|---|---|---|---|---|---|---|---|---|---|
UUU(F) | 784 | 1.25 | UCU(S) | 475 | 1.65 | UAU(Y) | 658 | 1.6 | UGU(C) | 190 | 1.46 |
UUC(F) | 475 | 0.75 | UCC(S) | 284 | 0.99 | UAC(Y) | 166 | 0.4 | UGC(C) | 70 | 0.54 |
UUA(L) | 692 | 1.76 | UCA(S) | 368 | 1.28 | UAA(*) 3 | 36 | 1.37 | UGA(*) 3 | 21 | 0.8 |
UUG(L) | 506 | 1.29 | UCG(S) | 148 | 0.51 | UAG(*) 3 | 22 | 0.84 | UGG(W) | 406 | 1 |
CUU(L) | 497 | 1.26 | CCU(P) | 390 | 1.61 | CAU(H) | 427 | 1.5 | CGU(R) | 333 | 1.42 |
CUC(L) | 164 | 0.42 | CCC(P) | 177 | 0.73 | CAC(H) | 141 | 0.5 | CGC(R) | 79 | 0.34 |
CUA(L) | 331 | 0.84 | CCA(P) | 281 | 1.16 | CAA(Q) | 605 | 1.51 | CGA(R) | 325 | 1.39 |
CUG(L) | 169 | 0.43 | CCG(P) | 123 | 0.51 | CAG(Q) | 197 | 0.49 | CGG(R) | 106 | 0.45 |
AUU(I) | 945 | 1.45 | ACU(T) | 468 | 1.58 | AAU(N) | 822 | 1.53 | AGU(S) | 358 | 1.24 |
AUC(I) | 408 | 0.63 | ACC(T) | 224 | 0.75 | AAC(N) | 253 | 0.47 | AGC(S) | 95 | 0.33 |
AUA(I) | 605 | 0.93 | ACA(T) | 362 | 1.22 | AAA(K) | 860 | 1.48 | AGA(R) | 426 | 1.82 |
AUG(M) | 547 | 1 | ACG(T) | 133 | 0.45 | AAG(K) | 304 | 0.52 | AGG(R) | 137 | 0.58 |
GUU(V) | 455 | 1.43 | GCU(A) | 577 | 1.8 | GAU(D) | 750 | 1.59 | GGU(G) | 531 | 1.33 |
GUC(V) | 156 | 0.49 | GCC(A) | 204 | 0.64 | GAC(D) | 196 | 0.41 | GGC(G) | 159 | 0.4 |
GUA(V) | 479 | 1.5 | GCA(A) | 348 | 1.09 | GAA(E) | 899 | 1.49 | GGA(G) | 649 | 1.62 |
GUG(V) | 185 | 0.58 | GCG(A) | 151 | 0.47 | GAG(E) | 307 | 0.51 | GGG(G) | 263 | 0.66 |