Skip to main content

Table 4 Relative synonymous codon usage for 79 distinct chloroplast protein-coding genes in N. nucifera

From: A precise chloroplast genome of Nelumbo nucifera (Nelumbonaceae) evaluated with Sanger, Illumina MiSeq, and PacBio RS II sequencing platforms: insight into the plastid evolution of basal eudicots

Codon Count 1 RSCU 2 Codon Count RSCU Codon Count RSCU Codon Count RSCU
UUU(F) 784 1.25 UCU(S) 475 1.65 UAU(Y) 658 1.6 UGU(C) 190 1.46
UUC(F) 475 0.75 UCC(S) 284 0.99 UAC(Y) 166 0.4 UGC(C) 70 0.54
UUA(L) 692 1.76 UCA(S) 368 1.28 UAA(*) 3 36 1.37 UGA(*) 3 21 0.8
UUG(L) 506 1.29 UCG(S) 148 0.51 UAG(*) 3 22 0.84 UGG(W) 406 1
CUU(L) 497 1.26 CCU(P) 390 1.61 CAU(H) 427 1.5 CGU(R) 333 1.42
CUC(L) 164 0.42 CCC(P) 177 0.73 CAC(H) 141 0.5 CGC(R) 79 0.34
CUA(L) 331 0.84 CCA(P) 281 1.16 CAA(Q) 605 1.51 CGA(R) 325 1.39
CUG(L) 169 0.43 CCG(P) 123 0.51 CAG(Q) 197 0.49 CGG(R) 106 0.45
AUU(I) 945 1.45 ACU(T) 468 1.58 AAU(N) 822 1.53 AGU(S) 358 1.24
AUC(I) 408 0.63 ACC(T) 224 0.75 AAC(N) 253 0.47 AGC(S) 95 0.33
AUA(I) 605 0.93 ACA(T) 362 1.22 AAA(K) 860 1.48 AGA(R) 426 1.82
AUG(M) 547 1 ACG(T) 133 0.45 AAG(K) 304 0.52 AGG(R) 137 0.58
GUU(V) 455 1.43 GCU(A) 577 1.8 GAU(D) 750 1.59 GGU(G) 531 1.33
GUC(V) 156 0.49 GCC(A) 204 0.64 GAC(D) 196 0.41 GGC(G) 159 0.4
GUA(V) 479 1.5 GCA(A) 348 1.09 GAA(E) 899 1.49 GGA(G) 649 1.62
GUG(V) 185 0.58 GCG(A) 151 0.47 GAG(E) 307 0.51 GGG(G) 263 0.66
  1. 1Count means the number of codons used in the 79 protein-coding genes.
  2. 2RSCU represents relative synonymous codon usage.
  3. 3Codons in bold with an asterisk represent stop codons.