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Table 1 Statistics of the N. nucifera chloroplast genome sequencing data from Illumina MiSeq and PacBio RS II

From: A precise chloroplast genome of Nelumbo nucifera (Nelumbonaceae) evaluated with Sanger, Illumina MiSeq, and PacBio RS II sequencing platforms: insight into the plastid evolution of basal eudicots

 

Illumina Miseq

PacBio RS II

Library size(bp)

400

20,000

Number of raw reads

12,164,066

226,904

High quality bases(M)

394

845

Mean read length(bp) (raw-data)

250

4,474

CP average read depth ( error-corrected)

712× (n.a.)

105×

proportion of bases > = Q40

99.99%

99.98%

SC average read depth

493×

83×

IR average read depth

531×

52×

No. of gaps

2

0

No. of contigs

1

1

The total length (bp)

163,747

163,600