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Table 1 Statistics of the N. nucifera chloroplast genome sequencing data from Illumina MiSeq and PacBio RS II

From: A precise chloroplast genome of Nelumbo nucifera (Nelumbonaceae) evaluated with Sanger, Illumina MiSeq, and PacBio RS II sequencing platforms: insight into the plastid evolution of basal eudicots

  Illumina Miseq PacBio RS II
Library size(bp) 400 20,000
Number of raw reads 12,164,066 226,904
High quality bases(M) 394 845
Mean read length(bp) (raw-data) 250 4,474
CP average read depth ( error-corrected) 712× (n.a.) 105×
proportion of bases > = Q40 99.99% 99.98%
SC average read depth 493× 83×
IR average read depth 531× 52×
No. of gaps 2 0
No. of contigs 1 1
The total length (bp) 163,747 163,600