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Table 3 PCR primers and fragment sequencing results

From: Analysis of wild-species introgressions in tomato inbreds uncovers ancestral origins

Marker

GenBank number

Position

SNP region^

Heinz*

YP*

PR

Gh13

LA1589*

LA2779

LA1969

LA1777

LA0386

BTI-87

S. gal*

REX

KF887310, KF887311

2,633,235

Chr6 NP

a

a

-

a

a

b

-

-

-

b

a

T0774

KF887301, KF887302

30,027,677

Chr6 NP

a

ac

-

a

ac

d

-

-

-

ad

ab

TG590

KF887295–KF887300

31,166,442

Peak Chr6

a

a

ab

be

ac

b

b

ad

d

bf

-

P6-051570

KF887303–KF887307

31,568,208

Peak Chr6

a

a

a

b

a

b

b

c

c

b

a

T0834

KF887312–KF887316

33,353,915

Peak Chr6

a

a

a

c

ab

cd

c

e

-

a

a

TG472

KF887308, KF887309

37,982,169

Chr6 NP

a

a

-

a

a

c

-

-

-

a

ab

P11-011790

KF887317, KF887318

4,777,374

Peak Chr11

a

a

-

b

b

c

-

-

-

b

a

P11-032130

KF887319, KF887320

21,629,704

Chr11 NP

a

a

-

a

ab

c

-

-

-

a

ab

P11-039390

KF887321, KF887322

23,182,355

Peak Chr11

a

a

-

c

c

d

-

-

-

a

ab

P11-039410

KF887323, KF887324

23,342,156

Peak Chr11

a

a

-

b

b

-

-

d

-

a

bc

P11-039420

KF887325

23,390,919

Peak Chr11

a

a

-

b

b

-

-

-

-

a

bc

P11-039500

KF887326

24,113,034

Peak Chr11

a

a

-

b

b

-

-

-

-

a

c

P11-044740

KF887327, KF887328

36,050,109

Chr11 NP

a

a

-

a

a

b

-

-

-

a

a

P11-045670

KF887329, KF887330

40,368,253

Chr11 NP

a

a

-

a

a

b

-

-

-

a

a

P11-050800

KF887331, KF887332

41,218,579

Chr11 NP

a

a

-

a

b

c

-

-

-

a

b

P11-051000

KF887333, KF887334

42,147,976

Chr11 NP

a

a

-

a

ab

c

-

-

-

a

ac

P11-056540

KF887335

43,330,076

Peak Chr11

a

a

-

b

b

-

-

-

-

a

bc

P11-062270

KF887336, KF887337

46,239,133

Peak Chr11

a

a

-

b

b

c

-

-

-

a

b

TG0302

KF887338–KF887341

51,878,967

Chr11 NP

a

a

-

a

b

c

-

d

d

a

b

  1. ^NP - Non SNP-peak.
  2. *Heinz 1706, Yellow Pear, S. galapagense, and S. pimpinellifolium (LA1589) sequences were extracted from their genome assemblies.