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Table 1 De novo assembly statistics

From: Differential transcriptome analysis reveals insight into monosymmetric corolla development of the crucifer Iberis amara

A
Data Read counts & nucleotides (Gb)
Total reads (4 libraries) 184,515,960 (9.4)
Matched 156,818,896 (8.0)
Not matched 27,697,064 (1.4)
Percent assembled 85
B
Statistics of contigs
Contig number 52,081
Max sequence size (nt) 12,804
Min sequence size (nt) 191
Average sequence size (nt) 677
C
Contig length (nt) Number of contigs %
100-499 30,739 59.02
500-999 11,326 21.75
1,000-1,999 7,435 14.28
2,000-4,999 2,457 4.72
5,000-9,999 120 0.23
> = 10,000 4 0.01
Total contig number 52,081 100.00
  1. (A) Clean reads from all four libraries, pooled together, were used for the de novo re-assembly of the Iberis petal transcriptome. (B) Statistics of re-assembled contigs. (C) All contigs of the stage A1 Iberis amara petal transcriptome are classified into categories according to their nucleotide length. For each category, respective contig numbers and percentage of the total contig number are given. Gb, giga basepairs; nt, nucleotides.