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Table 1 De novo assembly statistics

From: Differential transcriptome analysis reveals insight into monosymmetric corolla development of the crucifer Iberis amara

A

Data

Read counts & nucleotides (Gb)

Total reads (4 libraries)

184,515,960 (9.4)

Matched

156,818,896 (8.0)

Not matched

27,697,064 (1.4)

Percent assembled

85

B

Statistics of contigs

Contig number

52,081

Max sequence size (nt)

12,804

Min sequence size (nt)

191

Average sequence size (nt)

677

C

Contig length (nt)

Number of contigs

%

100-499

30,739

59.02

500-999

11,326

21.75

1,000-1,999

7,435

14.28

2,000-4,999

2,457

4.72

5,000-9,999

120

0.23

> = 10,000

4

0.01

Total contig number

52,081

100.00

  1. (A) Clean reads from all four libraries, pooled together, were used for the de novo re-assembly of the Iberis petal transcriptome. (B) Statistics of re-assembled contigs. (C) All contigs of the stage A1 Iberis amara petal transcriptome are classified into categories according to their nucleotide length. For each category, respective contig numbers and percentage of the total contig number are given. Gb, giga basepairs; nt, nucleotides.
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