Table 4 Potential candidate genes a located within the SCL1, SCT4 and SCT5 intervals
From: Identification of QTLs affecting scopolin and scopoletin biosynthesis in Arabidopsis thaliana
No. | Locus: Description ( TAIR ) | Gene expression level ( Arabidopsis eFP Browser ) | |
|---|---|---|---|
Relative level (Fold-change) | Absolute level | ||
Candidate genes selected from the QTL interval (SCT4) on chromosome 3: 9942057 to 10995480 nt. | |||
1. | AT3G27230: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | 1.18 | 210.15 |
2. | AT3G27325: Hydrolases, acting on ester bond | 1.20 | 40.38 |
3. | AT3G27340: Molecular_function unknown; involved in oxidation reduction | 1.62 | 83.80* |
4. | AT3G27890: Encodes NAD(P)H:quinone reductase | 1.59 | 367.30 |
5. | AT3G28200: Peroxidase superfamily protein | 2.42 | 242.03 |
6. | AT3G28480: Oxoglutarate/iron-dependent oxygenase | 0.82 | 130.66 |
7. | AT3G28740: Encodes a member of the cytochrome p450 family (CYP81D11) | 3.35 | 35.84 |
Candidate genes selected from the QTL interval (SCT5) on chromosome 5: 4235132 to 5725918 nt. | |||
8. | AT5G13780: Acyl-CoA N-acyltransferases (NAT) superfamily protein | 1.96 | 395.68 |
9. | AT5G14130: Peroxidase superfamily protein | 4.02 | 16.68 |
10. | AT5G14240: Thioredoxin superfamily protein | 2.49 | 397.36* |
11. | AT5G14340: Member of the R2R3 factor gene famil (MYB40) | 5.16 | 28.41* |
12. | AT5G14390: Alpha/beta-Hydrolases superfamily protein | 1.36 | 69.43 |
13. | AT5G14430: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | 1.26 | 261.78 |
14. | AT5G14750: Encodes a MyB-related protein containing R2 and R3 repeats (MYB66) | 64.45 | 99.90* |
15. | AT5G15130: Encodes a member of WRKY Transcription Factor (WRKY72) | 18.65 | 85.83* |
16. | AT5G15180: Peroxidase superfamily protein | 36.11 | 287.14# |
Candidate genes selected from the QTL interval (SCL1) on chromosome 5: 19414594 to 22027829 nt. | |||
17. | AT5G47950: HXXXD-type acyl-transferase family protein | 11.16 | 68* |
18. | AT5G47980: HXXXD-type acyl-transferase family protein | 28.79 | 66* |
19. | AT5G47990: Encodes a member of the CYP705A family of cytochrome P450 enzymes | 40.50 | 168* |
20. | AT5G48000: Encodes a member of the CYP708A family of cytochrome P450 enzymes | 221.82 | 189* |
21. | AT5G48020: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | 1.22 | 177 |
22. | AT5G48560: Basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 11.99 | 124 |
23. | AT5G48930: Encode shikimate O-hydroxycinnamoyltransferase (HCT)b | 1.70 | 757 |
24. | AT5G49520: Encodes WRKY48, a member of the WRKY Transcription Factor | 3.86 | 175* |
25. | AT5G49560: Putative methyltransferase family protein | 2.95 | 71 |
26. | AT5G49810: Methionine S-methyltransferase (MMT) | 1.27 | 349 |
27. | AT5G49950: Alpha/beta-Hydrolases superfamily protein | 1.16 | 119 |
28. | AT5G50890: Alpha/beta-Hydrolases superfamily protein | 1.27 | 36 |
29. | AT5G51130: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | 1.41 | 46.65 |
30. | AT5G51880: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | 0.99 | 291.46 |
31. | AT5G52260: Encodes a member of the R2R3 factor gene family (MYB19) | 4.83 | 30.21* |
32. | AT5G52400: Encodes a member of CYP715A | 1.03 | 12.91 |
33. | AT5G53560: Encodes a cytochrome b5 isoform that can be reduced by AtCBR | 1.54 | 1845.23 |
34. | AT5G53990: UDP-Glycosyltransferase superfamily protein | 19.54 | 10.75# |
35. | AT5G54080: Homogentisate 1,2-dioxygenase (HGO) | 1.53 | 254.15 |
36. | AT5G54160: OMT1:A caffeic acid/5-hydroxyferulic acid O-methyltransferase (OMT1)b | 1.01 | 758.6 |
37. | AT5G54230: Encodes a putative transcription factor (MYB49) | 7.01 | 34.73* |