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Table 3 Patterns of variation detected in the genes showing multiple selection signatures, based on 6106 SNP detected in 96 accessions (including wild accessions)

From: Genes involved in floral meristem in tomato exhibit drastically reduced genetic diversity and signature of selection

  CLV1   CNA   SYD   REV   FW2.2   RBL   BAM1   TD380   UFO  
Nucleotide diversity (π)                
SL 0.001559   0   0   0.000214   0.000283   0.000745   0.000175   0.000080   0.000518  
SLC 0.000022   0.000007   0.000050   0.000063   0.000015   0.000074   0.000036   0.000080   0.000217  
SP 0.001376   0.000079   0.000284   0.000548   0.000579   0.000638   0.001045   0.000171   0.000653  
WT 0.017814   0.004996   0.010979   0.010961   0.028111   0.011036   0.015765   0.013036   0.012120  
Tajima's D            
ALL -2.566 *** -1.620 # -1.554 n.s. -2.515 *** -2.112 * -2.214 ** -2.555 *** -1.528 n.s. -1.897 *
SL -2.177 ** n.a. n.a. n.a. n.a. -2.042 * -2.205 ** -2.131 ** -2.302 ** -1.069 n.s. -1.498 n.s.
SLC -1.668 # -1.077 n.s. -1.207 n.s. -2.455 ** -1.435 n.s. -1.838 * -1.784 # -1.290 n.s. -1.007 n.s.
SP -0.856 n.s. -1.429 n.s. -1.288 n.s. -0.844 n.s. -1.553 n.s. -1.903 * -1.438 n.s. -1.712 # -1.490 n.s.
WT -0.361 n.s. -0.866 n.s. 0.041 n.s. -0.465 n.s. -0.201 n.s. -0.459 n.s. -0.708 n.s. -0.119 n.s. -0.538 n.s.
Syn.-NonSyn. polymorphism           
dN 0.0076   0.0096   0.0235   0.0046   0.0135   0.0063   0.0013   0.0211   0.0152  
dS 0.0511   0.0286   0.0314   0.0228   0.0238   0.014   0.0178   0.0351   0.0317  
dN/dS 0.1550   0.3356   0.7529   0.2017   0.8074   0.4548   0.0774   0.6015   0.4794  
  1. Nucleotide diversity (π), Tajima's D and non synonymous (dN), synonymous (dS) and dN/dS are shown. (n.s., not significant; #, P < 0.10; *, P < 0.05; **, P < 0.01; ***, P < 0.001).
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BMC Plant Biology

ISSN: 1471-2229

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