|
Gene name
|
Gene ID
|
exon number
|
CDS lenght
|
exon length sequenced
|
SNP in coding sequences
|
Non synonymous SNPs
|
Synonymous SNPs
|
SNP in 3' UTR
|
SNP in 5' UTR
|
SNP in splicing site
|
SNP in STOP codon
|
|---|
|
AG
|
Solyc02g071730.2.1
|
5
|
5074
|
426
|
3
|
0
|
3
|
0
|
0
|
0
|
0
|
|
ANT
|
Solyc04g077490.2.1
|
7
|
3097
|
1893
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
|
AGO1
|
Solyc03g098280.2.1
|
19
|
6274
|
2650
|
25
|
6
|
19
|
3
|
0
|
0
|
0
|
|
BAM1
|
Solyc02g091840.2.1
|
2
|
3625
|
3514
|
32
|
6
|
26
|
4
|
7
|
0
|
0
|
|
CLV1
|
Solyc04g081590.2.1
|
2
|
3926
|
2436
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
|
CLV2
|
Solyc04g056640.1.1
|
1
|
2240
|
2240
|
4
|
3
|
1
|
0
|
0
|
0
|
0
|
|
CNA
|
Solyc03g120910.2.1
|
14
|
6463
|
2109
|
15
|
4
|
11
|
2
|
0
|
0
|
0
|
|
FIL
|
Solyc01g091010.2.1
|
7
|
3194
|
1070
|
7
|
3
|
4
|
3
|
3
|
0
|
0
|
|
FW2.2
|
Solyc02g090730.2.1
|
3
|
669
|
610
|
5
|
1
|
4
|
2
|
0
|
0
|
0
|
|
KAPP
|
Solyc01g079720.2.1
|
8
|
14613
|
1118
|
9
|
4
|
5
|
2
|
0
|
0
|
0
|
|
KOR1
|
Solyc01g102580.2.1
|
6
|
3289
|
2509
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
|
LAS
|
Solyc07g066250.1.1
|
1
|
1286
|
1286
|
29
|
6
|
23
|
0
|
0
|
0
|
0
|
|
LC
|
Solyc02g083940.2.1
|
1
|
5663
|
164
|
1
|
0
|
1
|
0
|
0
|
0
|
0
|
|
OVATE
|
Solyc02g085500.2.1
|
2
|
1383
|
1186
|
2
|
2
|
0
|
3
|
0
|
0
|
1 (lost)
|
|
PHB
|
Solyc02g024070.2.1
|
15
|
5882
|
2362
|
9
|
4
|
5
|
0
|
2
|
0
|
0
|
|
PHV
|
Solyc08g066500.2.1
|
15
|
5274
|
2225
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
|
RBL
|
Solyc02g081680.2.1
|
14
|
4985
|
2650
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
|
REV
|
Solyc11g069470.1.1
|
18
|
5512
|
2508
|
43
|
5
|
38
|
0
|
0
|
1
|
0
|
|
SP/TFL1
|
Solyc06g074350.2.1
|
2
|
1929
|
510
|
5
|
2
|
3
|
2
|
0
|
0
|
0
|
|
SHD
|
Solyc04g081570.2.1
|
15
|
5102
|
2769
|
28
|
6
|
22
|
4
|
3
|
0
|
0
|
|
STM
|
Solyc02g081120.2.1
|
4
|
3426
|
1592
|
6
|
3
|
3
|
4
|
1
|
0
|
0
|
|
SYD
|
Solyc02g068560.2.1
|
4
|
14883
|
3334
|
44
|
22
|
22
|
1
|
0
|
0
|
0
|
|
SUN
|
Solyc10g079240.1.1
|
5
|
2229
|
1261
|
15
|
10
|
5
|
0
|
0
|
0
|
1 (gained)
|
|
TD380
|
Solyc02g085390.2.1
|
5
|
7707
|
577
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
|
TPL
|
Solyc03g117360.2.1
|
25
|
9952
|
3043
|
29
|
4
|
25
|
9
|
0
|
0
|
0
|
|
ULT1
|
Solyc07g054450.2.1
|
3
|
3273
|
699
|
4
|
1
|
3
|
3
|
2
|
0
|
0
|
|
UFO
|
Solyc02g081670.1.1
|
2
|
1367
|
1367
|
20
|
7
|
13
|
0
|
0
|
0
|
0
|
|
WUS
|
Solyc02g083950.2.1
|
3
|
1238
|
1003
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
|
ZLL
|
Solyc09g082830.2.1
|
18
|
6153
|
2652
|
37
|
8
|
29
|
0
|
0
|
1
|
0
|
|
Supplementary genes within resequenced fragments
|
|
Adenylosuccinate synthetase
|
Solyc02g085520.2.1
|
1
|
8807
|
231
|
1
|
0
|
1
|
0
|
0
|
0
|
0
|
|
AHRD V1 - MDTK
|
Solyc02g090740.2.1
|
1
|
1608
|
1582
|
13
|
8
|
5
|
5
|
0
|
0
|
0
|
|
AHRD V1 - Q9LIL2_ARATH
|
Solyc01g102570.2.1
|
1
|
1314
|
62
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
|
ATP dependent RNA helicase
|
Solyc04g081580.2.1
|
2
|
6006
|
655
|
4
|
1
|
3
|
15
|
0
|
0
|
0
|
|
Glucosyltransferase
|
Solyc02g081690.1.1
|
1
|
1445
|
1445
|
11
|
4
|
7
|
0
|
0
|
0
|
0
|
|
Os01g0786800 protein
|
Solyc02g085400.2.1
|
3
|
2736
|
496
|
3
|
0
|
3
|
3
|
0
|
0
|
0
|
|
Ovate protein
|
Solyc02g085510.1.1
|
1
|
179
|
179
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
- Effects are detected with SnpEff with tomato annotation ITAG 2.3 version.
