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Table 1 Annotation of the candidate genes

From: Genes involved in floral meristem in tomato exhibit drastically reduced genetic diversity and signature of selection

Targeted tomato candidate genes and related annotation

Gene

Gene abbreviation

Arabidopsis gene id

Tomato gene id

Tomato chromosome

Pathway compartment

Arabidopsis annotation

Gene_references

TOPLESS

TPL

AT1G15750.1

Solyc03g117360.2.1

SL2.40ch03

Auxin pathway

WD-40 repeat protein-like

[38]

KORRIGAN 1

KOR1

AT5G49720.1

Solyc01g102580.2.1

SL2.40ch01

Cytokinesis

Endo 1,4 b glucanase

[39]-[41]

CORONA

CNA

AT1G52150.1

Solyc03g120910.2.1

SL2.40ch03

Floral meristem identity

HD ZIP III protein

[42]-[44]

ULTRAPETALA1

ULT1

AT4G28190.1

Solyc07g054450.2.1

SL2.40ch07

Floral meristem identity

SAND-domain transcription factor

[45]

ARGONAUTE 1

AGO1

AT1G48410.1

Solyc03g098280.2.1

SL2.40ch03

Floral meristem identity

YABBY/AGO

[46]-[48]

REBELOTE

RBL

AT3G55510.1

Solyc02g081680.2.1

SL2.40ch02

Floral meristem identity

unknown function

[49]

UNUSUAL FLORAL ORGAN

UFO

AT1G30950.1

Solyc02g081670.1.1

SL2.40ch02

Floral meristem identity

F box protein

[50]-[53]

SELF PRUNING

SP/TFL1

AT5G03840.1

Solyc06g074350.2.1

SL2.40ch06

Floral meristem identity

PEBP protein

[54]-[56]

FILAMENTOUS FLOWER

FIL-YAB1

AT2G45190.1

Solyc01g091010.2.1

SL2.40ch01

Floral organ identity

YABBY

[57]-[59]

LATERAL SUPPRESSOR

LAS

AT1G55580.1

Solyc07g066250.1.1

SL2.40ch07

Floral organ identity

GRAS family transcription factor

[60]-[62]

PHABULOSA

PHB

AT2G34710.1

Solyc02g024070.2.1

SL2.40ch02

Floral organ identity

HD ZIP III

[42],[63],[64]

PHAVOLUTA

PHV

AT1G30490.1

Solyc08g066500.2.1

SL2.40ch08

Floral organ identity

HD ZIP III

[42],[63],[64]

AINTEGUMENTA

ANT

AT4G37750.1

Solyc04g077490.2.1

SL2.40ch04

Floral organ identity

AP2/ERF transcription factor family

[65]-[67]

AGAMOUS

AG

AT4G18960

Solyc02g071730.2.1

SL2.40ch02

Floral organ identity

MADS Box transcription factor

[68]-[71]

CLAVATA 1

CLV1

AT1G75820.1

Solyc04g081590.2.1

SL2.40ch04

Meristem maintenance

LRR Receptor kinase

[72],[73]

KINASE ASSOCIATED PROTEIN PHOSPHATASE

KAPP

AT5G19280.1

Solyc01g079720.2.1

SL2.40ch01

Meristem maintenance

kinase-associated protein phosphatase

[74],[75]

SHEPERD

SHD

AT4G24190.1

Solyc04g081570.2.1

SL2.40ch04

Meristem maintenance

ER-resident HSP90-like protein

[76]

SHOOTMERISTEMLESS

STM

AT1G62360.1

Solyc02g081120.2.1

SL2.40ch02

Meristem maintenance

KNOX1 homeobox protein

[77]-[79]

SPLAYED

SYD

AT2G28290.1

Solyc02g068560.2.1

SL2.40ch02

Meristem maintenance

SNF2chromatin remodelling protein

[80]

WUSCHEL

WUS

AT2G17950.1

Solyc02g083950.2.1

SL2.40ch02

Meristem maintenance

WOX family protein

[81]-[84]

ZWILLE/ARGONAUTE10

ZLL-PNH-AGO10

AT5G43810.1

Solyc09g082830.2.1

SL2.40ch09

Meristem maintenance

YABBY/AGO

[46],[85]

CLAVATA 2

CLV2

AT1G65380.1

Solyc04g056640.1.1

SL2.40ch04

Meristem maintenance

LRR Receptor like protein

[86],[87]

REVOLUTA

REV

AT5G60690.1

Solyc11g069470.1.1

SL2.40ch11

Meristem maintenance

HD ZIP III

[42],[64]

BARELY ANY MERISTEM 1

BAM1

AT5G65700.1

Solyc02g091840.2.1

SL2.40ch02

Meristem maintenance

LRR-RLKs kinase

[88],[89]

LOCULE NUMBER

LC

AT5G66240.2

Solyc02g083940.2.1

SL2.40ch02

NA

non coding region

[23],[25],[26],[90]

FRUIT WEIGHT 2.2

FW2.2/ATPCR2

AT1G14870.1

Solyc02g090730.2.1

SL2.40ch02

NA

Plac gene family motif

[21],[91]-[95]

OVATE*

OVATE/ATOFP7

AT2G18500.1

Solyc02g085500.2.1

SL2.40ch02

NA

Ovate family Protein

[22],[58],[96]-[98]

SUN*

SUN

AT5G03960.1

Solyc10g079240.1.1

SL2.40ch10

NA

IQ67 family protein

[99],[100]

TD380*

TD380 /DDM1

AT5G66750.1

Solyc02g085390.2.1

SL2.40ch02

NA

SNF2 chromatin remodelling protein

[33],[101]

NON CODING

NCD

non coding

non coding

SL2.40ch02

NA

non coding region

NA

Gene

Gene abbreviation

Arabidopsis gene id

Tomato solyc id

Tomato chromosome

 

Arabidopsis annotation

Gene_references

AHRD V1 ***- Q9LIL2_ARATH

EIF3C

AT3G56150.2

Solyc01g102570.2.1

SL2.40ch01

NA

eukaryotic translation initiation factor 3C

[102]

AHRD V1 *-*- MDTK

ZF14

AT1G58340.1

Solyc02g090740.2.1

SL2.40ch02

NA

MATE efflux family protein

[103]

Ovate protein

ATOFP6, OFP6

AT3G52525.1

Solyc02g085510.1.1

SL2.40ch02

NA

ovate family protein - 55 7e-09

[98]

Adenylosuccinate synthetase

ADSS

AT3G57610.1

Solyc02g085520.2.1

SL2.40ch02

NA

adenylosuccinate synthase

[104]

Glucosyltransferase

UGT71B8

AT3G21800.1

Solyc02g081690.1.1

SL2.40ch02

NA

UDP-glucosyl transferase 71B8

[105]

ATP dependent RNA helicase

DEA(D/H) Box

AT4G16630.1

Solyc04g081580.2.1

SL2.40ch04

NA

DEA(D/H)-box RNA helicase family protein

[106]

Os01g0786800 protein

Exporter

AT2G25737.1

Solyc02g085400.2.1

SL2.40ch02

NA

Sulfite exporter TauE/SafE family protein

[107]

  1. Gene function, Arabidopsis thaliana and tomato gene ID, Tomato chromosome location (v2.40) and bibliographic references. Supplementary genes partially sequenced.
  2. *Cloned tomato genes.