Targeted tomato candidate genes and related annotation | |||||||
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Gene | Gene abbreviation | Arabidopsis gene id | Tomato gene id | Tomato chromosome | Pathway compartment | Arabidopsis annotation | Gene_references |
TOPLESS | TPL | AT1G15750.1 | Solyc03g117360.2.1 | SL2.40ch03 | Auxin pathway | WD-40 repeat protein-like | [38] |
KORRIGAN 1 | KOR1 | AT5G49720.1 | Solyc01g102580.2.1 | SL2.40ch01 | Cytokinesis | Endo 1,4 b glucanase | |
CORONA | CNA | AT1G52150.1 | Solyc03g120910.2.1 | SL2.40ch03 | Floral meristem identity | HD ZIP III protein | |
ULTRAPETALA1 | ULT1 | AT4G28190.1 | Solyc07g054450.2.1 | SL2.40ch07 | Floral meristem identity | SAND-domain transcription factor | [45] |
ARGONAUTE 1 | AGO1 | AT1G48410.1 | Solyc03g098280.2.1 | SL2.40ch03 | Floral meristem identity | YABBY/AGO | |
REBELOTE | RBL | AT3G55510.1 | Solyc02g081680.2.1 | SL2.40ch02 | Floral meristem identity | unknown function | [49] |
UNUSUAL FLORAL ORGAN | UFO | AT1G30950.1 | Solyc02g081670.1.1 | SL2.40ch02 | Floral meristem identity | F box protein | |
SELF PRUNING | SP/TFL1 | AT5G03840.1 | Solyc06g074350.2.1 | SL2.40ch06 | Floral meristem identity | PEBP protein | |
FILAMENTOUS FLOWER | FIL-YAB1 | AT2G45190.1 | Solyc01g091010.2.1 | SL2.40ch01 | Floral organ identity | YABBY | |
LATERAL SUPPRESSOR | LAS | AT1G55580.1 | Solyc07g066250.1.1 | SL2.40ch07 | Floral organ identity | GRAS family transcription factor | |
PHABULOSA | PHB | AT2G34710.1 | Solyc02g024070.2.1 | SL2.40ch02 | Floral organ identity | HD ZIP III | |
PHAVOLUTA | PHV | AT1G30490.1 | Solyc08g066500.2.1 | SL2.40ch08 | Floral organ identity | HD ZIP III | |
AINTEGUMENTA | ANT | AT4G37750.1 | Solyc04g077490.2.1 | SL2.40ch04 | Floral organ identity | AP2/ERF transcription factor family | |
AGAMOUS | AG | AT4G18960 | Solyc02g071730.2.1 | SL2.40ch02 | Floral organ identity | MADS Box transcription factor | |
CLAVATA 1 | CLV1 | AT1G75820.1 | Solyc04g081590.2.1 | SL2.40ch04 | Meristem maintenance | LRR Receptor kinase | |
KINASE ASSOCIATED PROTEIN PHOSPHATASE | KAPP | AT5G19280.1 | Solyc01g079720.2.1 | SL2.40ch01 | Meristem maintenance | kinase-associated protein phosphatase | |
SHEPERD | SHD | AT4G24190.1 | Solyc04g081570.2.1 | SL2.40ch04 | Meristem maintenance | ER-resident HSP90-like protein | [76] |
SHOOTMERISTEMLESS | STM | AT1G62360.1 | Solyc02g081120.2.1 | SL2.40ch02 | Meristem maintenance | KNOX1 homeobox protein | |
SPLAYED | SYD | AT2G28290.1 | Solyc02g068560.2.1 | SL2.40ch02 | Meristem maintenance | SNF2chromatin remodelling protein | [80] |
WUSCHEL | WUS | AT2G17950.1 | Solyc02g083950.2.1 | SL2.40ch02 | Meristem maintenance | WOX family protein | |
ZWILLE/ARGONAUTE10 | ZLL-PNH-AGO10 | AT5G43810.1 | Solyc09g082830.2.1 | SL2.40ch09 | Meristem maintenance | YABBY/AGO | |
CLAVATA 2 | CLV2 | AT1G65380.1 | Solyc04g056640.1.1 | SL2.40ch04 | Meristem maintenance | LRR Receptor like protein | |
REVOLUTA | REV | AT5G60690.1 | Solyc11g069470.1.1 | SL2.40ch11 | Meristem maintenance | HD ZIP III | |
BARELY ANY MERISTEM 1 | BAM1 | AT5G65700.1 | Solyc02g091840.2.1 | SL2.40ch02 | Meristem maintenance | LRR-RLKs kinase | |
LOCULE NUMBER | LC | AT5G66240.2 | Solyc02g083940.2.1 | SL2.40ch02 | NA | non coding region | |
FRUIT WEIGHT 2.2 | FW2.2/ATPCR2 | AT1G14870.1 | Solyc02g090730.2.1 | SL2.40ch02 | NA | Plac gene family motif | |
OVATE* | OVATE/ATOFP7 | AT2G18500.1 | Solyc02g085500.2.1 | SL2.40ch02 | NA | Ovate family Protein | |
SUN* | SUN | AT5G03960.1 | Solyc10g079240.1.1 | SL2.40ch10 | NA | IQ67 family protein | |
TD380* | TD380 /DDM1 | AT5G66750.1 | Solyc02g085390.2.1 | SL2.40ch02 | NA | SNF2 chromatin remodelling protein | |
NON CODING | NCD | non coding | non coding | SL2.40ch02 | NA | non coding region | NA |
Gene | Gene abbreviation | Arabidopsis gene id | Tomato solyc id | Tomato chromosome | Â | Arabidopsis annotation | Gene_references |
AHRD V1 ***- Q9LIL2_ARATH | EIF3C | AT3G56150.2 | Solyc01g102570.2.1 | SL2.40ch01 | NA | eukaryotic translation initiation factor 3C | [102] |
AHRD V1 *-*- MDTK | ZF14 | AT1G58340.1 | Solyc02g090740.2.1 | SL2.40ch02 | NA | MATE efflux family protein | [103] |
Ovate protein | ATOFP6, OFP6 | AT3G52525.1 | Solyc02g085510.1.1 | SL2.40ch02 | NA | ovate family protein - 55 7e-09 | [98] |
Adenylosuccinate synthetase | ADSS | AT3G57610.1 | Solyc02g085520.2.1 | SL2.40ch02 | NA | adenylosuccinate synthase | [104] |
Glucosyltransferase | UGT71B8 | AT3G21800.1 | Solyc02g081690.1.1 | SL2.40ch02 | NA | UDP-glucosyl transferase 71B8 | [105] |
ATP dependent RNA helicase | DEA(D/H) Box | AT4G16630.1 | Solyc04g081580.2.1 | SL2.40ch04 | NA | DEA(D/H)-box RNA helicase family protein | [106] |
Os01g0786800 protein | Exporter | AT2G25737.1 | Solyc02g085400.2.1 | SL2.40ch02 | NA | Sulfite exporter TauE/SafE family protein | [107] |