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Table 1 Sequence information of the carotenogenesis-related genes from L. barbarum and L. ruthenicum

From: Comparative analysis of carotenoid accumulation in two goji (Lycium barbarum L. and L. ruthenicumMurr.) fruits

Gene ORF length Protein length cTP b Protein identity Protein identity Lb vs Sl c Protein identity
(bp a, Lb/Lr) (Lb/Lr) Lb vs Lr (%) (accession number of Sl) d Lr vs Sl
DXS1 2154/2154 717/717 YES 98.61 95.13 (FN424051) 95.13
DXS2 2139/2139 712/712 YES 98.88 92.30 (FN424052) 92.72
PSY1 1239/1239 412/412 YES 99.03 87.26 (ABU40772) 86.54
PSY2 1323/1323 440/440 YES 99.55 91.14 (ABU40771) 90.68
PDS 1749/1749 582/582 YES 98.28 93.83 (AGO05926) 94.17
Z-ISO 1122/1131 373/376 NO 97.07 86.90 (XP_004252966) 85.94
ZDS 1767/1767 588/588 YES 99.32 95.24 (AGO05927) 95.24
CRTISO 1815/1815 604/604 NO 99.67 93.33 (AAL91366) 93.01
LCY-B 1506/1506 501/501 YES 99.20 87.43 (NP_001234226) 87.43
CYC-B 1497/1497 498/498 YES 97.59 87.95 (AAG21133) 88.55
LCY-E 1572/1572 523/523 YES 99.62 92.41 (Y14387) 92.60
CYP97A29 1818/1812 605/603 YES 97.69 90.97 (ACJ25969) 89.98
CYP97C11 1644/1641 547/546 YES 98.54 91.64 (ACJ25968) 91.64
CRTR-B1 915/906 304/301 NO 98.36 87.38 (CAB55625) 85.76
CRTR-B2 939/939 312/312 NO 97.76 85.99 (CAB55626) 84.08
ZEP 1989/1986 662/661 YES 98.49 89.99 (P93236) 89.39
VDE 1413/1413 470/470 YES 98.30 88.49 (ACM92036) 88.49
NCED1 1824/1824 607/607 YES 99.01 89.22 (CAB10168) 88.56
NCED6 1764/1764 587/587 YES 96.08 80.74 (XP_004240215) 80.41
CCD1A 1623/1623 540/540 YES 98.89 93.03 (AAT68187) 93.76
CCD4 1800/1800 599/599 YES 99.83 85.86 (XP_004246004) 85.86
CHRC 966/966 321/321 YES 96.26 84.76 (ABC42191) 85.37
Or1 906/906 301/301 NO 99.34   86.90
Or2 945/945 314/314 NO 97.77   88.22
HSP21 711/711 236/236 YES 97.46 79.41 (AAB07023) 80.25
Average     98.42 89.03 88.83
  1. aThe size in base pairs of the putative coding region from the predicted ATG to the stop codon, and bold numbers indicate that the length of coding regions are different between L. barbarum (Lb) and L. ruthenicum (Lr); bSoftberry ProtComp (http://linux1.softberry.com/berry.phtml?topic=protcomppl&group=programs&subgroup=proloc) prediction for a chloroplast transit peptide; cSolanum lycopersicum (Sl); dAccession from NCBI (http://www.ncbi.nlm.nih.gov/).