Table 4 Target prediction and annotation of novel miRNAs with marked expression change during dormancy-activity transition
miRNAs | Target genes | Annotations |
|---|---|---|
0A-m0034_5p | POPTR_0011s05660 | Transcription factorPHOX2/ARIX |
| Â | POPTR_0007s07100 | Ribonucleotide reductase, alpha subunit |
| Â | POPTR_0006s24000 | Predicted mitochondrial carrier protein |
| Â | POPTR_0005s08950 | Ribonucleotide reductase |
0A-m0035_5p | No prediction | Â |
0A-m0134_3p | POPTR_0019s02795 | Calmodulin binding protein |
POPTR_0014s08840 | Photosystem II CP47 chlorophyll protein | |
POPTR_0011s12360 | COP1-Interacting Protein 7 | |
0A-m0013_3p | POPTR_0019s02795 | Calmodulin binding protein |
POPTR_0014s08840 | Photosystem II CP47 chlorophyll protein | |
POPTR_0019s02910 | NBS resistance protein | |
0A-m0051_5p | POPTR_0017s09870 | Galactose oxidase/kelch repeat superfamily |
| Â | POPTR_0001s33900 | Galactose oxidase/kelch repeat superfamily |
0A-m0066_3p | POPTR_0019s02910 | NBS resistance protein |
| Â | POPTR_0014s08840 | Photosystem II CP47 chlorophyll protein |
0A-m0062_3p | POPTR_0007s15090 | Histone acetyltransferase |
0A-m0050_3p | POPTR_0001s25740 | Anthranilate synthase, alpha subunit 2 |
0A-m0146_5p | POPTR_0009s07980 | no functional annotations |
0A-m0078_5p | POPTR_0001s38870 | Leucine rich repeat protein |
| Â | POPTR_0005s00880 | Leucine rich repeat protein |
0A-m0045_5p | POPTR_0003s11180 | no functional annotations |
| Â | POPTR_0018s07190 | BREVIS RADIX-like 4 |
0A-m0007_3p | POPTR_0017s04700 | Cc-NBS-LRR resistance protein |
POPTR_0017s00570 | Cc-NBS-LRR resistance protein | |
POPTR_0006s28970 | no functional annotations | |
POPTR_0006s00970 | no functional annotations | |
0A-m0004_5p | POPTR_0010s00460 | no functional annotations |
| Â | POPTR_0004s00300 | Protein of unknown function (DUF506) |
| Â | POPTR_0002s18590 | Protein phosphatase 2C |
0A-m0084_5p | POPTR_0005s06530 | ABC transporter family protein |
POPTR_0007s06200 | Pentatricopeptide repeat-containing protein | |
POPTR_0007s07050 | Zinc finger protein | |
0A-m0077_5p | POPTR_0013s11290 | Ubiquitin-conjugating enzyme |
0A-m0108_5p | POPTR_0005s09600 | Similar to nucleolin |
POPTR_0009s09760 | Plant basic secretory protein (BSP) family protein | |
POPTR_0005s06140 | Alcohol dehydrogenase | |
0A-m0114_3p | POPTR_0107s00260 | S-locus glycoprotein family |
| Â | POPTR_0107s00240 | S-locus glycoprotein family |
| Â | POPTR_0107s00270 | S-locus glycoprotein family |
| Â | POPTR_0107s00230 | S-locus glycoprotein family |
0A-m0149_5p | POPTR_0003s07030 | Plant invertase/pectin methylesterase inhibitor |
0A-m0057_5p | POPTR_0007s07340 | Peroxidase |
| Â | POPTR_0001s22740 | lupus la ribonucleoprotein |
| Â | POPTR_0012s13820 | Ca2+/calmodulin-dependent protein kinase |
5A-m0010_5p | POPTR_0006s03300 | bZIP transcription factor |
POPTR_1554s00200 | bZIP transcription factor | |
5A-m0081_3p | POPTR_0002s15530 | No apical meristem (NAM) protein |
5A-m0104_3p | POPTR_0008s11280 | 6-phosphogluconate dehydrogenase |
| Â | POPTR_0006s11050 | Protein tyrosine kinase |
| Â | POPTR_0016s14560 | Protein tyrosine kinase |
5A-m0027_3p | POPTR_0014s13420 | Elongation factor Tu |
| Â | POPTR_0009s02980 | Domain of unknown function (DUF966) |
| Â | POPTR_0016s04110 | Light stress-regulated 1 |
A-m0003_3p | POPTR_0017s03190 | no functional annotations |
POPTR_0017s03260 | no functional annotations | |
A-m0070_3p | POPTR_0001s27600 | Nuclear polyadenylated RNA binding protein |
A-m0059_5p | POPTR_0016s14740 | Zinc transporter and related ZIP domain-containing proteins |
| Â | POPTR_0006s11190 | Zinc transporter and related ZIP domain-containing proteins |
| Â | POPTR_0002s14740 | 3-phosphoshikimate 1-carboxyvinyltransferase |
A-m0089_3p | POPTR_0019s02910 | NBS resistance protein |
POPTR_0019s02795 | Calmodulin binding protein | |
A-m0100_3p | POPTR_0018s02600 | Lysosomal Pro-X carboxypeptidase |
A-m0107_3p | POPTR_0001s06660 | Mitochondrial transcription termination factor |
| Â | POPTR_0003s18980 | Mitochondrial transcription termination factor |
| Â | POPTR_0001s07200 | Mitochondrial transcription termination factor |
A-m0165_5p | POPTR_0046s00370 | no functional annotations |
| Â | POPTR_0003s09790 | NBS-lRR resistance protein |
POPTR_0001s35160 | Domains rearranged methyltransferase 2 | |
A-m0108_3p | POPTR_0003s15190 | no functional annotations |
| Â | POPTR_1856s00200 | no functional annotations |
A-m0122_3p | POPTR_0011s11810 | MATE efflux family protein |
| Â | POPTR_0131s00210 | MATE efflux family protein |
A-m0150_5p | POPTR_0001s18390 | Sulfite exporter TauE/SafE family |
| Â | POPTR_0007s12960 | 3-methyladenine DNA glycosidase |
A-m0126_3p | POPTR_0019s02795 | Calmodulin binding protein |
POPTR_0019s02910 | NBS resistance protein |