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Table 1 List of annotated MYB genes with two or more repeats in the B. vulgaris ssp. vulgaris (KWS2320) genome

From: Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet (Beta vulgaris)

Gene ID

Gene code

Chr.

Position on pseudochr.

Clade (subgroup)

Landmark MYB in clade

Functional assignment

Protein length [aa]

Exon nr.

iquc

Bv1g001230_iquc

1

1,379,505

1,381,156

C14 (S4)

AtMYB4, HvMYB5

Metabolism

341

3

owzx

Bv1g001750_owzx

1

1,903,239

1,898,047

C8 (S3)

AtMYB58, AtMYB63

Metabolism

316

3

dwki

Bv1g002800_dwki

1

3,065,434

3,067,536

C18 (S5)

VvMYBPA

Metabolism

335

2

qxpi

Bv1g006050_qxpi

1

6,597,147

6,601,421

C3

AtLMI2

Development

303

3

ksfi

Bv1g014750_ksfi

1

32,690,615

32,692,641

C12 (S14)

SlBLIND, AtRAX1

Development

363

3

zqor

Bv1ug018140_zqor

1un

38,330,908

38,328,715

C28 (S18)

HvGAMYB, AtDUO1

Development

303

3

jxgt

Bv1ug021520_jxgt

1un

45,201,741

45,199,866

C36 (S21)

AtLOF1, AtMYB52

Devel., metab.

350

2

uksi

Bv2g023560_uksi

2

127,507

126,341

C35 (S23)

  

253

1

wdyc

Bv2g024650_wdyc

2

1,373,912

1,378,227

C35 (S23)

  

416

2

ihfg

Bv2g027580_ihfg

2

4,418,041

4,424,427

C15

FaMYB1

Metabolism

199

3

jkkr

Bv2g027795_jkkr

2

4,723,639

4,720,911

C21

 

(metabolism)

224

3

mxck

Bv2g027990_mxck

2

4,981,898

4,984,692

C29

  

286

4

xprd

Bv2g029260_xprd

2

6,275,539

6,272,224

C27

EgMYB2, PtMYB4

Metabolism

422

2

ralf

Bv2g030925_ralf

2

8,431,718

8,435,595

C21

 

(metabolism)

237

3

ghua

Bv2g031800_ghua

2

9,813,407

9,800,544

C37 (MYB3R)

AtMYB3R1

Cell cycle

1050

11

huqy

Bv2g039110_huqy

2

27,806,443

27,798,295

C26

AtMYB26

Development

329

2

dcmm

Bv2g040720_dcmm

2

33,641,162

33,643,072

C1 (S9)

AmMIXTA, AtNOK

differentiation

454

3

mxwz

Bv2g041120_mxwz

2

34,717,448

34,719,429

C11

AtTDF1

Development

331

3

nqis

Bv2ug047120_nqis

2un

45,488,410

45,491,366

C4 (S1)

AtMYB30

Defense

344

3

urrg

Bv3g049510_urrg

3

1,126,350

1,124,818

C9 (S2)

NtMYB1, AtMYB13

Defense

288

3

hwcc

Bv3g050090_hwcc

3

1,847,195

1,845,526

C6 (S24)

  

360

3

cwtt

Bv3ug070140_cwtt

3un

35,695,445

35,697,294

C29

  

242

3

cjuq

Bv4g071740_cjuq

4

221,407

222,747

C19

VvMYB5a

Metabolism

306

2

yruo

Bv4g073190_yruo

4

1,667,414

1,671,378

C27

EgMYB2, PtMYB4

Metabolism

397

2

ygxg

Bv4g074860_ygxg

4

3,396,314

3,392,041

C28 (S18)

HvGAMYB, AtDUO1

Development

556

3

skuh

Bv4g078900_skuh

4

7,533,943

7,547,807

C42 (MYB4R)

AtMYB4R1

 

919

12

zfig

Bv4g079610_zfig

4

8,546,454

8,544,269

C25 (S13)

AtMYB61

Metabolism

449

3

oref

Bv4g079670_oref

4

8,669,284

8,678,138

C41 (CDC5)

AtCDC5

Cell cycle

991

4

josh

Bv4g083815_josh

4

16,552,338

16,566,035

   

209

3

rwwj

Bv4g084340_rwwj

4

18,292,096

18,285,979

C14 (S4)

AtMYB4, HvMYB5

Metabolism

322

3

xwne

Bv4g091510_xwne

4

32,888,798

32,889,966

C11

AtTDF1

Development

316

3

jofq

Bv5g098940_jofq

5

834,523

837,220

C10

  

294

2

sskd

Bv5g100530_sskd

5

2,767,018

2,770,045

C23

AtMYB103

Development

378

3

mhxh

Bv5g101320_mhxh

5

3,800,529

3,804,868

C37 (MYB3R)

AtMYB3R1

Cell cycle

525

7

zkef

Bv5g107260_zkef

5

14,451,259

14,465,332

   

272

2

ztyd

Bv5g110930_ztyd

5

25,553,310

25,538,334

C32 (S19)

AtMYB21

Development

231

3

udmh

Bv5g110960_udmh

5

25,780,619

25,782,807

C4 (S1)

AtMYB30

Defense

293

3

tcwd

Bv5g112510_tcwd

5

31,754,754

31,740,788

C37 (MYB3R)

AtMYB3R1

Cell cycle

549

7

nmrg

Bv5g115970_nmrg

5

42,841,475

42,839,260

C4 (S1)

AtMYB30

Defense

334

3

oaxt

Bv5g116880_oaxt

5

44,348,080

44,350,042

C11

AtTDF1

Development

356

3

tfkh

Bv5g118200_tfkh

5

46,474,363

46,471,416

C38 (S25)

AtPGA37

Development

501

3

ahtj

Bv5g118320_ahtj

5

46,667,594

46,670,167

C38 (S25)

AtPGA37

Development

456

3

cfqe

Bv5g118940_cfqe

5

47,478,672

47,484,506

   

354

3

roao

Bv5g122000_roao

5

50,845,046

50,849,238

C9 (S2)

NtMYB1, AtMYB13

Defense

304

3

iogq

Bv5g122370_iogq

5

51,297,529

51,287,534

C13 (S7)

ZmP, AtPFG1

Metabolism

387

3

ijmc

Bv5g123335_ijmc

5

52,180,596

52,182,338

C33 (S20)

TaPIMP1, AtBOS1

Def., devel.

313

3

ohkk

Bv5ug126300_ohkk

5un

58,923,676

58,920,132

C39

AmPHAN, AtAS1

Development

369

1

knac

Bv5ug126380_knac

5un

59,366,406

59,371,048

C36 (S21)

AtLOF1, AtMYB52

Devel., metab.

354

3

qcwx

Bv5ug126530_qcwx

5un

60,109,952

60,111,819

C7 (S11)

AtMYB102

Defense

334

2

such

Bv6g128620_such

6

508,583

510,104

C34 (S22)

AtMYB44

Def., devel.

313

1

hwmt

Bv6g129790_hwmt

6

2,064,496

2,062,852

C12 (S14)

SlBLIND, AtRAX1

Development

321

3

oypc

Bv6g136060_oypc

6

9,418,772

9,413,559

C6 (S24)

  

326

3

usyi

Bv6g142590_usyi

6

24,870,820

24,874,245

C33 (S20)

TaPIMP1, AtBOS1

Def., devel.

275

3

qttn

Bv6g154730_qttn

6

58,819,129

58,822,997

C36 (S21)

AtLOF1, AtMYB52

Devel., metab.

461

3

zeqy

Bv6g155340_zeqy

6

59,766,073

59,770,527

C40

AtFLP

Differentiation

445

12

yejr

Bv7g162730_yejr

7

7,720,067

7,722,320

C12 (S14)

SlBLIND, AtRAX1

Development

380

3

ahzs

Bv7g172570_ahzs

7

37,491,045

37,494,304

C26

AtMYB26

Development

405

3

eztu

Bv7g172590_eztu

7

37,594,009

37,596,132

C26

AtMYB26

Development

417

3

qzms

Bv7g174540_qzms

7

40,066,216

40,070,163

C38 (S25)

AtPGA37

Development

481

3

ksge

Bv7g176420_ksge

7

42,070,277

42,071,595

C30

AtMYB59

Development

249

3

qzfy

Bv7ug180860_qzfy

7un

49,349,681

49,351,461

C31

  

264

3

dxny

Bv8g183050_dxny

8

719,286

716,855

C7 (S11)

AtMYB102

Defense

409

3

zguf

Bv8g183060_zguf

8

734,446

721,513

C7 (S11)

AtMYB102

Defense

396

3

jona

Bv8g199535_jona

8

37,703,170

37,704,769

C12 (S14)

SlBLIND, AtRAX1

Development

271

3

khqq

Bv8g200250_khqq

8

38,542,747

38,540,562

C12 (S14)

SlBLIND, AtRAX1

Development

368

3

gjwr

Bv9g216350_gjwr

9

33,882,588

33,884,593

C14 (S4)

AtMYB4, HvMYB5

Metabolism

276

2

krez

Bv9g225930_krez

9

44,634,979

44,633,906

C34 (S22)

AtMYB44

Def., devel.

253

1

ezhe

Bvg229250_ezhe

rnd0020

411,935

416,451

C28 (S18)

HvGAMYB, AtDUO1

Development

410

3

crae

Bvg229400_crae

rnd0039

39,535

40,725

C17 (S5)

AtTT2

Metabolism

282

3

entg

Bvg229850_entg

rnd0043

141,170

143,052

C33 (S20)

TaPIMP1, AtBOS1

Def., devel.

310

3

swwi

Bvg235150_swwi

rnd0157

176,581

179,181

   

191

3

oyjz

Bvg238960_oyjz

rnd0254

47,161

49,928

C3

AtLMI2

Development

239

3

dani

Bvg239075_dani

rnd0254

156,586

162,101

C24 (S16)

AtLAF1

Development

285

3

sjwa

Bvg239080_sjwa

rnd0254

178,734

182,264

C24 (S16)

AtLAF1

Development

278

3

pgya

Bvg243050_pgya

rnd0446

12,407

14,214

   

326

3

  1. The genes are ordered by RefBeet pseudochromosomes, from north to south. The unique, immutable four-letter identifier (gene ID) is given in the first column. The modifiable, annotation-version-specific gene code describing the chromosomal assignment and position on pseudochromosomes is given in the second column. "un" indicates the assignment to a chromosome without position and "rnd" indicates scaffolds without chromosomal assignment. Clade classification and functional assignment is based on the NJ tree presented in Figure 3.