Genome-wide annotation of the soybean WRKY family and functional characterization of genes involved in response to Phakopsora pachyrhiziinfection

Table 2 Expression pattern of WRKY encoding-genes under P. pachyrhizi infection ^a (Group I and IIa)

Group	Gene ID	SuperSage - LGE	RNA-Seq of lesion LCM^b	Microarray - van de Mortel et al. [[17]]^c				Microarray - Schneider et al. [[22]]
		Incompatible reaction (PI561356-*Rpp1*)	PI561356 X BRS231	Incompatible reaction (PI230970-*Rpp2*)		Compatible reaction (Embrapa48)		Compatible reaction (PI462312-*Rpp3*X Taiwan 80-2)		Incompatible reaction (PI462312-*Rpp3*X Hawaii 94-1)
		Inoculated X Mock	Inoculated	Inoculated X Mock		Inoculated X Mock		Inoculated X Mock		Inoculated X Mock
		12, 24, 48 h	10 days	12 h	120 h	12 h	120 h	12 h	144 h	12 h	144 h
I	Glyma03g05220			x	x	x	x
I	Glyma01g31921			x	x	x	x
I	Glyma18g44030				x	x	x
I	Glyma09g41670		x		x	x	x
I	Glyma18g06360		x	x	x	x	x
I	Glyma11g29720			x	x	x	x
I	Glyma14g38010			x	x	x	x
I	Glyma02g39870			x	x	x	x
I	Glyma09g38581		x
I	Glyma04g12830			x	x	x	x
I	Glyma06g47880			x	x	x	x
I	Glyma08g43770			x	x	x	x
I	Glyma18g09040			x	x	x	x
I	Glyma07g35381		x
I	Glyma18g49830			x		x
I	Glyma08g26230			x		x			x
IIa	Glyma04g06470		x
IIa	Glyma17g33920			x	x	x	x				x
IIa	Glyma14g11920			x	x	x	x	x	x	x
IIa	Glyma15g00570	x		x	x	x	x				x
IIa	Glyma13g44730			x	x	x	x
IIa	Glyma08g23380			x	x	x	x		x		x
IIa	Glyma07g02630			x	x	x	x				x
IIa	Glyma17g33891			x	x	x	x
IIa	Glyma14g11960	x	x	x		x	x

^aThe expression data were obtained from four global expression experiments: SuperSAGE available at www.lge.ibi.unicamp.br/soja/, RNA-Seq of microdissected lesions and two different microarrays available in the current literature. The x denotes significant differences (p < 0.05). The genes indicated in bold were used in further analyses. The genes were ordered according to the clustering analysis.
^bLCM: laser-capture microdissection.
^cSome probes hybridized with more than one gene.

ISSN: 1471-2229