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Table 1 Annotation of Glycine max WRKY transcription factors (Choromosome 1 to 3)

From: Genome-wide annotation of the soybean WRKY family and functional characterization of genes involved in response to Phakopsora pachyrhiziinfection

Chr

Gene IDa

Nameb

Alternative transcripts

CDS (pb)

Protein (aa)

Groupsc

Expression

Soybase

Domain modifications

(Phytozome)

Confirmedd

EST ID

1

Glyma01g05050

GmWRKY3

1

1530

510

IIb

+

-

 

1

Glyma01g06550

GmWRKY9

1

1368

456

I

+

EU019557.1

 

1

Glyma01g06870

GmWRKY28

2

894

298

IIc

+

CA938308.1

 

1

Glyma01g31921

GmWRKY5

2

1524

508

I

+

EU019554.1

WRKYGQK → WRKYGEK (N-terminal)

1

Glyma01g39600

GmWRKY35

2

966

322

IId

+

BG651351.1

 

1

Glyma01g43130

GmWRKY65

1

738

246

IIe

+

-

CX(N)CX(N)HXH/C → CX(N)CX(N)HXD

1

Glyma01g43420

GmWRKY12

1

969

323

III

+

EU019558.1

 

2

Glyma02g01031

GmWRKY66

1

1455

485

IIb

-

-

 

2

Glyma02g01420

GmWRKY67

1

963

321

IIc

+

BT096212.1

 

2

Glyma02g02430*

GmWRKY68

2

1443

481

IIb

-

-

 

2

Glyma02g12490

GmWRKY69

1

1368

456

I

+

FK022538.1

 

2

Glyma02g12830

GmWRKY32

1

882

294

IIc

+

BM527576.1

 

2

Glyma02g15920

GmWRKY22

4

1068

355

IId

+

AK244154.1

 

2

Glyma02g36510

GmWRKY70

1

1518

506

I

+

FG988660.1

 

2

Glyma02g39870

GmWRKY39

1

1743

581

I

+

BM188894.1

 

2

Glyma02g45530

GmWRKY71

1

1014

338

IIc

+

BE020472.1

 

2

Glyma02g46280

GmWRKY72

2

1206

402

IIb

-

-

 

2

Glyma02g46690

GmWRKY73

2

1767

589

I

+

BG789786.1

 

2

Glyma02g47650

GmWRKY74

1

1524

508

I

+

CO984087.1

 

3

Glyma03g00460

GmWRKY75

1

816

272

III

+

BT095645.1

 

3

Glyma03g05220

GmWRKY76

1

1524

508

I

+

EV272592.1

WRKYGQK → WRKYGEK (N-terminal)

3

Glyma03g25770

GmWRKY77

1

717

239

IIc

+

EV274902.1

 

3

Glyma03g31630

GmWRKY15

2

1026

342

IId

+

CD397604.1

 

3

Glyma03g33376

GmWRKY29

2

1347

449

I

+

EU019569.1

 

3

Glyma03g37870

GmWRKY41

1

762

254

IIe

+

EU019577.1

 

3

Glyma03g37940

GmWRKY51

1

864

288

IIc

+

BT098285.1

 

3

Glyma03g38360

GmWRKY78

2

1626

542

IIb

+

DB956313.1

 

3

Glyma03g41750

GmWRKY43

1

1089

363

III

+

EU019579.1

 
  1. aReannotated genes with original sequences containing wrong start\stop codons are marked with (*).
  2. bThe names GmWRKY1-64 are given according to Zhou et al. [38]; GmWRKY65-182 are given according to the chromosome order.
  3. cThe classification according to Eugelm et al. [24].
  4. dThe expression confirmation according to SoyBase ESTs, RNA-Seq analysis (in silico analysis) and RNA-Seq of ASR lesion microdissection (experimental analysis).
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BMC Plant Biology

ISSN: 1471-2229

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