Table 1 Transcripts that were both pathogen-responsive and differentially regulated (≥1.5 fold) in the uzu derivative of barley cultivar Akashinriki-uzu, as compared to parent type barley line

Contig5883_s

2.35282

9.89E-04

3.47814

4.86E-06

GO:0000162

AAM19104.1

Phosphoribosylanthranilate transferase

4.00E-35

Oryza sativa

Contig10483

1.77649

4.93E-04

2.03916

5.33E-05

GO:0016491

NP_177122.2

Acid phosphatase

7.00E-22

Arabidopsis thaliana

Contig12753

6.85586

3.48E-04

8.65154

1.60E-04

GO:0000166

BAB93292.1

Putative ABC transporter

4.00E-75

Oryza sativa

Contig10167

4.05623

1.60E-05

4.42652

1.38E-05

GO:0003700

BAB93351.1

Hypothetical protein B1131B07.13

6.00E-43

Oryza sativa

Contig11212

15.30721

8.05E-06

8.85902

2.01E-04

GO:0003824

AAL58118.1

Putative flavanone 3-hydroxylase

1.00E-72

Oryza sativa

HV_CEb0014M10r2

2.53882

4.62E-04

3.69271

1.20E-05

GO:0003824

AAF89745.3

Phosphatidic acid phosphatase beta

2.00E-15

Vigna unguiculata

Contig1179

3.15308

7.72E-04

3.69557

6.89E-04

GO:0005634

P05621

Histone H2B.2

5.00E-44

Triticum aestivum

Contig13350

8.37292

2.88E-08

38.39412

8.05E-12

GO:0005975

AAD28734.1

β-1,3-glucanase precursor

7.00E-65

Triticum aestivum

HV_CEb0022J21r2

4.86722

4.44E-04

10.55195

5.40E-05

GO:0006857

AAG46153.1

Putative peptide transporter

2.00E-32

Oryza sativa

HVSMEm0003C15r2_s

4.03305

1.11E-05

9.02364

1.73E-09

GO:0006952

A31800

Glucan endo-1,3-beta-D-glucosidase

2.00E-48

Hordeum vulgare

Contig10115

2.49729

9.01E-04

4.69131

1.10E-06

GO:0009058

NP_199633.1

Indole-3-glycerol phosphate synthase

1.00E-62

Arabidopsis thaliana

Contig18088

2.24148

9.93E-05

2.74884

9.52E-06

GO:0009536

S39045

Probable finger protein WZF1

2.00E-35

Triticum aestivum

Contig5542

2.61205

8.75E-04

2.91793

3.14E-04

GO:0009536

AAG42689.1

Putative tryptophan synthase α

1.00E-65

Zea mays

Contig21646

6.15205

6.18E-06

5.32979

4.06E-05

GO:0015297

BAC20746.1

Putative integral membrane protein

1.00E-26

Oryza sativa

Contig7898

2.74868

2.24E-04

2.68024

9.67E-04

GO:0016020

BAB64118.1

Hypothetical protein P0039A07.26

1.00E-62

Oryza sativa

Contig12237

3.62694

2.18E-08

7.23322

7.95E-12

GO:0016023

Q9M5X7

Nonspecific lipid-transfer protein precursor

2.00E-09

Malus domestica

Contig1636

2.83333

1.53E-05

3.82892

1.95E-07

GO:0016023

Q02126

Glucan endo-1,3-beta-glucosidase GIII

e-164

Hordeum vulgare

Contig1637

3.92582

1.23E-04

10.52758

2.30E-08

GO:0016023

D38664

Glucan endo-1,3-beta-D-glucosidase

e-162

Hordeum vulgare

Contig1637_s

3.72453

1.04E-04

6.92245

1.89E-07

GO:0016023

D38664

Glucan endo-1,3-beta-D-glucosidase

e-162

Hordeum vulgare

Contig1639

5.68725

2.62E-05

6.68401

8.82E-06

GO:0016023

S35156

β-glucanase

e-106

Hordeum vulgare

Contig2212_s

4.33587

3.48E-05

7.27081

3.89E-05

GO:0016023

P35793

Pathogenesis-related protein PRB1-3

8.00E-88

Hordeum vulgare

Contig26496

2.99884

5.20E-04

17.90724

4.22E-16

GO:0016023

No hit

Contig2790_s

2.12349

1.71E-05

2.17092

5.04E-05

GO:0016023

AAK55325.1

Thaumatin-like protein TLP7

5.00E-74

Hordeum vulgare

Contig2990

2.32856

7.50E-04

4.22865

2.14E-06

GO:0016023

S48847

Chitinase

e-134

Hordeum vulgare

Contig3667_s

2.61309

8.97E-04

3.87741

9.78E-06

GO:0016023

T06179

MYB-related protein

e-164

Hordeum vulgare

Contig3947_s

2.40807

4.30E-04

3.94464

4.87E-07

GO:0016023

AAK55323.1

Thaumatin-like protein TLP4

5.00E-71

Hordeum vulgare

Contig4174

2.60929

2.83E-04

4.31725

6.89E-07

GO:0016023

S39979

Chitinase

1.00E-66

Oryza sativa

Contig6007

3.03741

2.95E-04

4.3984

1.99E-05

GO:0016023

BAB63883.1

Putative bromelain-like thiol protaease

7.00E-48

Oryza sativa

Contig2210/ Contig4054_s

2.816

3.17E-04

10.06151

8.75E-11

GO:0006952

Q05968

Pathogenesis-related protein 1

2E-80

Hordeum vulgare

Contig2550_x

2.11143

9.56E-04

3.1568

1.71E-05

GO:0016998

T06169

Pathogenesis-related protein 4

8.00E-77

Hordeum vulgare

Contig6576

2.21974

8.26E-04

4.15007

3.54E-05

GO:0016998

T06169

Pathogenesis-related protein 4

1.00E-50

Hordeum vulgare

Contig6576_s

2.92619

4.27E-04

5.06554

1.51E-06

GO:0016998

T06169

Pathogenesis-related protein 4

1.00E-50

Hordeum vulgare

Contig18116

3.68173

2.25E-04

6.95245

6.21E-07

GO:0043169

NP_181494.1

Glycosyl hydrolase family 17

1.00E-30

Arabidopsis thaliana

Contig2170/ Contig5974_s

18.26831

1.03E-11

11.48664

5.37-E06

GO:0016021

Q01482

Pathogen-induced protein WIR1A

3.00E-08

Triticum aestivum

HV_CEb0017C08r2

12.97883

4.83E-07

17.09899

3.83E-07

GO:0046274

AAK37826.1

Laccase

1.00E-19

Pinus taeda

Contig7354

2.06008

1.15E-04

2.04682

2.71E-04

GO:0050660

NP_567283.1

Protein id: At4g05020.1

4.00E-89

Arabidopsis thaliana

Contig13114

3.63475

9.89E-04

5.33272

8.45E-05

No hit

AAG21913.1

Putative cyanase

7.00E-08

Oryza sativa

Contig14625

3.09771

4.86E-04

3.05281

7.41E-04

No hit

No hit

EBem10_SQ002_I10_s

3.3918

7.91E-08

3.93247

6.25E-08

No hit

AAK55326.1

Thaumatin-like protein TLP8

8.00E-04

Hordeum vulgare

EBro08_SQ012_C01

3.10739

4.52E-05

3.48265

2.89E-04

No hit

No hit

HO04B16S

1.72257

6.40E-05

1.58429

0.00012

GO:0008152

BAB16426.1

Elicitor inducible gene product EIG-I24

2E-20

Nicotiana tabacum

Contig12169

1.9972

0.000228

1.62783

0.000548

GO:0016020

AAM93464.1

Unknown protein

9E-89

Oryza sativa

Contig6004

1.69354

1.41E-04

2.61521

5.12E-04

No hit

NP_564147.1

Unknown protein

2.00E-10

Arabidopsis thaliana

Contig2500

1.52109

0.000730

1.54984

0.000443

No hit

BAB07974.1

Unknown protein

1E-42

Oryza sativa

Contig7790

−4.25752

5.86E-05

−4.22732

8.49E-06

GO:0003676

NP_564325.1

Protein id: At1g29250.1

9.00E-44

Arabidopsis thaliana

Contig21684

−9.02614

7.66E-08

−2.09451

1.51E-04

GO:0016762

AAM62971.1

Putative xyloglucan endotransglycosylase

4.00E-34

Arabidopsis thaliana

Contig12965

−2.31955

9.43E-04

−7.42733

3.19E-06

GO:0005525

NP_192854.1

Translation initiation factor IF-2

1.00E-71

Arabidopsis thaliana

Contig4431_s

−2.82605

2.50E-10

−2.81901

9.86E-05

No hit

AAK44146.1

Unknown protein

1.00E-08

Arabidopsis thaliana

Contig17319

−1.84164

9.67E-04

−2.18675

1.31E-05

GO:0003723

BAC05662.1

Unknown protein

2.00E-40

Oryza sativa

Contig16536

−1.77974

6.09E-04

−1.91262

2.94E-04

GO:0003735

NP_189267.1

Unknown protein

1.00E-16

Arabidopsis thaliana