From: Comparative in silicoanalysis of EST-SSRs in angiosperm and gymnosperm tree genera
(a) | ||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Motif | Populus | Eucalyptus | Betula | Fagus | Quercus | Citrus | Prunus | Fraxinus | ||||||||||||||||
 | 5′UTR | ORF | 3′UTR | 5′UTR | ORF | 3′UTR | 5′UTR | ORF | 3′UTR | 5′UTR | ORF | 3′UTR | 5′UTR | ORF | 3′UTR | 5′UTR | ORF | 3′UTR | 5′UTR | ORF | 3′UTR | 5′UTR | ORF | 3′UTR |
AC/GT | 53 | 22 | 53 | 27 | 7 | 12 | - | - | 98 | 61 | 11 | 7 | 103 | 27 | 43 | 27 | 8 | 18 | 165 | 48 | 101 | 91 | 6 | 34 |
AG/CT | 822 | 185 | 148 | 1788 | 684 | 431 | 1131 | 649 | 350 | 1173 | 181 | 262 | 1885 | 439 | 471 | 230 | 73 | 47 | 5992 | 2226 | 2655 | 431 | 113 | 109 |
AT/AT | 73 | 57 | 178 | 7 | 8 | 15 | - | - | 432 | 69 | 38 | 128 | 205 | 63 | 317 | 60 | 16 | 57 | 697 | 129 | 811 | - | 6 | - |
CG/CG | - | 8 | - | - | - | - | - | - | - | - | - | - | - | 1 | - | - | - | - | - | - | - | - | - | - |
ACG/CGT | 27 | 42 | 14 | 29 | 63 | 11 | - | - | - | 6 | 10 | - | 5 | 18 | 1 | 6 | 17 | 2 | 15 | 63 | 9 | - | - | - |
ACT/AGT | 23 | 23 | 14 | 17 | 4 | 9 | 66 | 34 | - | 13 | 24 | 5 | 27 | 38 | 29 | 6 | 9 | 4 | 29 | 114 | 136 | - | 4 | 21 |
AAC/GTT | 10 | 12 | 9 | 5 | 1 | - | 85 | 57 | - | 15 | 30 | 10 | 39 | 55 | 17 | 3 | 10 | 1 | 40 | 43 | 22 | - | - | - |
AAG/CTT | 93 | 46 | 43 | 98 | 63 | 28 | - | 77 | - | 111 | 52 | 22 | 125 | 91 | 31 | 38 | 28 | 12 | 168 | 90 | 86 | - | 4 | 11 |
AAT/ATT | 30 | 11 | 51 | - | 5 | 3 | - | 14 | - | 13 | 11 | 36 | 24 | 14 | 42 | 29 | 16 | 21 | 34 | 26 | 41 | - | 4 | 25 |
ACC/GGT | 26 | 35 | 7 | - | 25 | 3 | - | 57 | - | - | 12 | 5 | 6 | 45 | 3 | 5 | 10 | 1 | 7 | 33 | 5 | - | 4 | - |
AGG/CCT | 33 | 32 | 7 | 26 | 63 | 12 | - | - | - | 13 | 22 | - | 5 | 20 | 3 | 2 | 7 | 1 | 36 | 33 | 26 | - | - | - |
CCG/CCG | 4 | 7 | 1 | 52 | 183 | 12 | - | - | - | - | 1 | - | 1 | 6 | - | 2 | 6 | 1 | - | 5 | - | - | - | - |
(b) | ||||||||||||||||||||||||
Motif | Picea | Pinus | Cryptomeria | Gnetum | Cycas | Zamia | Ginkgo | Â | ||||||||||||||||
 | 5′UTR | ORF | 3′UTR | 5′UTR | ORF | 3′UTR | 5′UTR | ORF | 3′UTR | 5′UTR | ORF | 3′UTR | 5′UTR | ORF | 3′UTR | 5′UTR | ORF | 3′UTR | 5′UTR | ORF | 3′UTR |  | ||
AC/GT | 3 | 3 | 4 | 1 | 2 | 1 | 19 | - | 9 | 36 | - | - | - | 11 | 51 | 79 | 116 | 88 | 40 | 44 | 17 | Â | ||
AG/CT | 95 | 93 | 37 | 101 | 80 | 40 | 19 | 46 | 55 | 76 | 60 | 91 | 54 | 33 | 143 | 170 | 194 | 182 | 120 | 60 | 120 | Â | ||
AT/AT | 85 | 31 | 157 | 67 | 39 | 100 | 8 | 12 | 53 | 20 | 45 | 91 | 64 | 40 | 160 | 254 | 194 | 308 | 346 | 60 | 346 | Â | ||
CG/CG | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | Â | ||
ACG/CGT | 1 | 10 | 1 | - | 8 | - | - | 14 | 7 | 76 | 172 | 48 | - | 2 | - | - | 38 | - | - | 10 | - | Â | ||
ACT/AGT | 1 | 1 | 2 | - | 3 | - | 9 | 8 | 7 | 38 | 31 | - | - | - | - | - | 14 | 11 | - | - | - | Â | ||
AAC/GTT | 1 | 3 | - | 1 | 2 | 1 | 5 | 5 | - | 13 | 13 | 12 | - | - | - | - | - | - | - | - | - | Â | ||
AAG/CTT | 1 | 6 | 2 | 1 | 7 | - | 6 | 26 | 10 | 76 | 57 | 86 | 10 | 9 | - | 8 | 32 | 16 | - | 5 | - | Â | ||
AAT/ATT | 4 | 3 | 5 | 2 | 2 | 5 | 5 | 3 | 20 | - | 4 | 12 | - | 2 | 5 | 18 | 31 | 33 | 40 | 8 | 12 | Â | ||
ACC/GGT | 1 | 2 | - | 1 | 2 | - | 11 | - | - | 27 | - | - | - | - | - | - | 9 | - | - | - | - | Â | ||
AGG/CCT | 5 | 13 | 1 | - | 4 | 1 | 8 | 19 | - | 29 | 37 | 12 | - | - | 6 | 8 | 14 | - | 12 | - | - | Â | ||
CCG/CCG | 1 | 4 | - | - | 2 | - | - | 10 | 4 | - | 14 | - | - | - | - | - | - | - | - | - | - | Â |