From: Comparative in silicoanalysis of EST-SSRs in angiosperm and gymnosperm tree genera
(a) | 5′UTR | ORF | 3′UTR | ||||
---|---|---|---|---|---|---|---|
Genus | Mean Genome size (pg) | Motif length* (bp) | Counts Mbp | Motif length* (bp) | Counts Mpb | Motif length* (bp) | Counts Mbp |
Populus | 0.52 | 24.8 (6.04) | 1483 | 25.7 (8.10) | 580 | 24.8 (7.60) | 653 |
Eucalyptus | 0.6 | 25.5 (5.31) | 2267 | 25.1 (5.48) | 1248 | 25.3 (5.83) | 638 |
Betula | 0.62 | 23.1 (3.34) | 1404 | 22.7 (3.02) | 893 | 21.4 (1.51) | 945 |
Fagus | 0.56 | 24 (5.36) | 1698 | 25.2 (7.01) | 465 | 23.9 (4.90) | 622 |
Quercus | 0.87 | 24.2 (5.27) | 2739 | 25.2 (7.98) | 949 | 24.3 (6.78) | 1109 |
Citrus | 0.44 | 24.7 (6.75) | 503 | 25.2 (8.15) | 247 | 24.6 (6.87) | 210 |
Prunus | 0.57 | 27.5 (8.95) | 7965 | 29.5 (11.38) | 3089 | 26.9 (8.57) | 4537 |
Fraxinus | 0.93 | 24.2 (3.38) | 551 | 28.7 (10.23) | 183 | 22.4 (4.17) | 236 |
(b) | 5′UTR | ORF | 3′UTR | ||||
Genus | Mean Genome size (pg) | Motif Length* (bp) | Counts Mbp | Motif Length* (bp) | Counts Mbp | Motif Length* (bp) | Counts Mbp |
Picea | 18.1 | 29.7 (19.49) | 247 | 32.1 (23.20) | 206 | 28.6 (13.59) | 250 |
Pinus | 26.4 | 30.2 (17.80) | 216 | 32.4 (19.09) | 184 | 27.4 (11.98) | 187 |
Cryptomeria | 11.2 | 22.8 (3.95) | 223 | 26.2 (10.37) | 218 | 24.4 (8.40) | 240 |
Gnetum | 3.4 | 23.5 (4.22) | 632 | 24.8 (7.96) | 664 | 22.7 (3.64) | 549 |
Cycas | 14.7 | 23.8 (6.34) | 173 | 26.4 (11.59) | 109 | 24.9 (7.05) | 399 |
Zamia | 17 | 25.8 (6.55) | 610 | 29.0 (12.64) | 701 | 26.3 (8.4) | 734 |
Ginkgo | 11.8 | 24.5 (4.37) | 386 | 29.2 (19.69) | 210 | 27.1 (8.11) | 539 |