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Table 3 List of VvTFLlA polymorphisms showing significant association after Bonferroni correction(<0.05) with flowering time, cluster width and berry weight throughstructured MLM tests using either R or TASSEL

From: Haplotype diversity of VvTFL1A gene and association with cluster traits ingrapevine (V. vinifera)

   

MLM-R

MLM-TASSEL

Trait

Marker

Haplogroup

P-value

Bonf corr < 0.05

P-value

Bonf corr < 0.05

R2 Marker

Flowering time

Ins883

HGA

2.72E-04

*

2.19E-03

 

0.104

 

K-737

HGA

1.04E-03

*

6.42E-03

 

0.089

 

Ins422

HGC

1.24E-03

*

6.01E-03

 

0.089

Berry weight

M-196

 

1.47E-08

*

2.23E-06

*

0.163

 

Ins883

HGA

5.76E-07

*

8.40E-05

*

0.118

 

S-327

HGA

1.33E-06

*

3.06E-04

*

0.105

 

K-737

HGA

3.54E-06

*

5.83E-04

 

0.095

 

S-35

HGA

9.17E-06

*

4.24E-04

*

0.105

 

W270

HGA

1.02E-04

*

2.84E-04

*

0.112

 

Ins-2054

HGA

1.58E-04

*

2.16E-03

 

0.074

 

Ins422

HGC

2.32E-04

*

1.30E-02

 

0.059

Cluster width

Ins883

HGA

1.63E-05

*

1.72E-04

*

0.130

 

K-737

HGA

9.18E-05

*

1.88E-03

 

0.097

 

S-327

HGB

3.34E-04

*

3.30E-03

 

0.086

 

Ins422

HGC

1.07E-03

*

1.34E-02

 

0.066

  1. Corresponding P-value and variance explained by the marker(R2 Marker) obtained using TASSEL is indicated, *correspond tosignificant adjusted P-values(<0.05).
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BMC Plant Biology

ISSN: 1471-2229

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