Table 1 SSH library characteristics by clone abundance and length, proportion of singlets and contigs and related redundancy
| Â | Â | Clones | Â | Â | Singlets | Â | Â | Contigs | Â | Â | Unigenes | Â | Redundancy % | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
library | No. | % | Mean (bp) | Size range (bp) | No. | % | Mean (bp) | Size range (bp) | No. | % | Mean (bp) | Size range (bp) | No. | % | Mean (bp) | Size range (bp) | |
A | 345 | 28.0 | 512 | 123-900 | 173 | 77.0 | 522 | 123-865 | 53 | 23.0 | 629 | 261-1401 | 226 | 30.7 | 546 | 123-1401 | 2.6 |
B | 339 | 27.6 | 495 | 141-862 | 104 | 70.3 | 507 | 141-834 | 44 | 29.7 | 726 | 153-1620 | 148 | 20.1 | 572 | 141-1620 | 7.4 |
C | 302 | 24.6 | 487 | 110-838 | 226 | 90.0 | 484 | 110-838 | 25 | 10.0 | 676 | 341-1541 | 251 | 34.0 | 503 | 110-1541 | 4.0 |
D | 244 | 19.8 | 508 | 106-825 | 70 | 62.5 | 488 | 106-808 | 42 | 37.5 | 717 | 264-2295 | 112 | 15.2 | 574 | 106-2295 | 6.1 |
Total | 1,230 | 100.0 | 500 | 106-900 | 573 | 77.7 | 500 | 106-865 | 164 | 22.3 | 685 | 153-2295 | 737 | 100.0 | 541 | 106-2295 | — |