Skip to main content

Table 1 Summary of sequences analysis

From: De novo sequencing, assembly, and analysis of the Taxodium‘Zhongshansa’ roots and shoots transcriptome in response to short-term waterlogging

Sample Raw reads Clean reads Clean bases Error (%) Q20 (%) Q30 (%) GC (%)
Root1_1 22398042 20461257 3.07G 0.05 98.03 93.18 44.28
Root1_2 22398042 20461257 3.07G 0.05 97.66 92.42 44.31
Shoot1_1 20428709 17569959 2.64G 0.05 98.40 94.19 45.32
Shoot1_2 20428709 17569959 2.64G 0.07 95.79 86.91 45.37
Root2_1 24059986 21610426 3.24G 0.05 97.88 92.69 44.37
Root2_2 24059986 21610426 3.24G 0.06 96.99 90.46 44.42
Shoot2_1 20592635 17355269 2.6G 0.05 98.31 93.91 45.52
Shoot2_2 20592635 17355269 2.6G 0.09 94.30 83.15 45.58
Summary 174958744 153993822 23.1G     
  1. Root1: Controlled root.
  2. Root2: Treated root.
  3. Root1_1: Reads sequencing of controlled root from the left.
  4. Root1_2: Reads sequencing of controlled root from the right.
  5. Q20: The percentage of bases with a Phred value >20.
  6. Q30: The percentage of bases with a Phred value >30.