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Table 1 Newly identified miRNAs in superior and inferior spikelets during rice grain filling

From: Differentially expressed microRNA cohorts in seed development may contribute to poor grain filling of inferior spikelets in rice

miRNA ID

Sequence

Length

10DAFS

15DAFS

21DAFS

27DAFS

35DAFS

10DAFI

15DAFI

21DAFI

27DAFI

35DAFI

Evidence#

miRn1

TCTTCGATAAGAATGCTGGCA

21

0

0

0

0

0

1.03

0

181.5

0

0

H

miRn2

TGATGTGTAGCACAATGCGGCTT

23

0

0

0

0

0

254.34

176.41

93.89

0

0

H

miRn3

TTGAGACGTAGAGGATAAGGT

21

0

0

0

1.29

1.31

0

1.79

1.58

0

2.31

F

miRn4

TTGGCAACGGACGCGATGGT

20

1.97

0.9

0

0

0

3.27

2.47

2.16

2.2

0.58

F

miRn5

TTTTGCTCAAGACCGCGCAAC

21

0.91

0.45

0

0

0

2.84

1.45

1.78

0.34

0

F

miRn6

TAAAGGAAGAAGAGAGAGAGT

21

0.7

0.6

0

0

0

3.27

0.6

1.14

0.56

0.72

F

miRn7

TGGATACTGGTAGAGGCGCCGCT

23

0

0

0

0

0

0

0

0

0

1.3

*

miRn8

TCCGACGCGAACTGGATGAGGCC

23

0

0

0

0

0

0.6

0

0

0

0

*

miRn9

TTCTGCTTGTGTATCGTCGCC

21

0

0

0

0

0

1.55

0

0.63

0

0

*

miRn10

AAGTGTGTAATGTTGAACGGA

21

0

0

0

0

0

1.03

0

0

0

0

*

miRn11

TGGTGAGCCACTGGGATGAGGATG

24

0

0

0

0

0

0

0

1.01

0

0

*

miRn12

TTTGAGATCTGGTGAGAATGTA

22

0

0

0

0

0

0

0

0.89

0

0

*

miRn13

AAGGGGCGCTTACTGAGAGTTCT

23

0

0.38

0

0

0

0.43

0

0

0.28

0.36

*

  1. #Evidence of identified miRNA, ‘*’ indicates the detection of the corresponding miRNA. ‘F’ indicates that the miRNA were founded at least in five of the ten libraries. ‘H’ represents the abundance of the miRNA higher than 50 TPM in one of the ten databases.