Table 2 Markers used to survey population diversity*
Marker name | Reverse primer | Forward primer (includes M13 tail) | Repeat unit | No. of Repeats | No. of alleles in six Bd lines | No. of alleles in all lines |
|---|---|---|---|---|---|---|
ALB001 | ttctccaccacactccttcc | cacgacgttgtaaaacgacgatcgtgttcttccccttca | ct | 22 | 4 | 12 |
ALB006 | cctcctccaacaaccacagt | cacgacgttgtaaaacgactagtagcccccaagccttct | gt | 15 | 4 | 10 |
ALB008 | atgggcgagaagacagagaa | cacgacgttgtaaaacgacacgggaactcaccatttcac | ctt | 13 | 4 | 11 |
ALB013 | atccgtgtttcgttctttgg | cacgacgttgtaaaacgactttgccaatgcttcaaactg | ga | 12 | 3 | 9 |
ALB022 | atttctgcccagcaaacact | cacgacgttgtaaaacgacgacctcccctgtctcaggt | ct | 11 | 3 | 12 |
ALB030 | gtagtccagccccatcttcc | cacgacgttgtaaaacgaccgtccgcaagcttgtttt | ttg | 9 | 3 | 16 |
ALB034 | tgctgcttcttttgtcgatg | cacgacgttgtaaaacgacaatggtggatctgcagaagg | aac | 9 | 3 | 7 |
ALB040 | agtcctcctcctcgctaagg | cacgacgttgtaaaacgacccctgcttccctctctctct | ctt | 8 | 3 | 10 |
ALB050 | ggagggagaaaaatgccttc | cacgacgttgtaaaacgactagtagcccccaagccttct | gt | 15 | 4 | 11 |
ALB056 | tccacagagcaccacagaag | cacgacgttgtaaaacgactcctctggttcctgagatcg | gt | 10 | 3 | 9 |
ALB086 | caactgatcccgagctcttc | cacgacgttgtaaaacgacgtccggaaccaacgaaaac | aag | 7 | 3 | 7 |
ALB087 | gacttgatgaagccctgctc | cacgacgttgtaaaacgacacaggcagcagcaggaac | agc | 7 | 3 | 6 |
ALB089 | tgagtcgaataagccggaag | cacgacgttgtaaaacgaccttcacccagctgctcatc | cag | 7 | 3 | 8 |
ALB100 | caggtacgtcaccaggttca | cacgacgttgtaaaacgaccggagacgacgacagagg | gca | 7 | 3 | 14 |
ALB131 | gacacatcgttggcaatgtc | cacgacgttgtaaaacgaccaacggagtggtacgttgtg | ggc | 7 | 4 | 7 |
ALB139 | tgtaccggaggatgaagtcc | cacgacgttgtaaaacgacgtgccaaatccaagaaggaa | aga | 7 | 3 | 11 |
ALB155 | atatcacccccacaggaacc | cacgacgttgtaaaacgactgatcagagtccccaaaacc | ct | 15 | 3 | 6 |
ALB158 | tgtcttgtcccctgcgata | cacgacgttgtaaaacgacgcgctccttgagctgtattg | gaa | 14 | 4 | 14 |
ALB160 | tgctgatcccatttcctcat | cacgacgttgtaaaacgacgtgcccgaggactatcatgt | ct | 13 | 3 | 10 |
ALB165 | atttgccccacaaatggtta | cacgacgttgtaaaacgacttcgtggttcaacaacatgg | ata | 12 | 3 | 18 |
ALB170 | agggtggctgtttagacgaa | cacgacgttgtaaaacgacttgggaatctccaggttcag | tg | 10 | 3 | 15 |
ALB175 | ctgacgttagggtggctgtt | cacgacgttgtaaaacgacttgggaatctccaggttcag | tg | 10 | 4 | 9 |
ALB179 | caccggaagtggagaagaag | cacgacgttgtaaaacgactgatcaagtgcaaggaaacg | ct | 9 | 4 | 24 |
ALB181 | gggttccacctgtcagaaaa | cacgacgttgtaaaacgacatgccaaatgggactgtttc | ac | 9 | 3 | 6 |
ALB183 | tggtgatttaaatggcacaaa | cacgacgttgtaaaacgacgggatatgcccaattttgaa | tct | 9 | 3 | 7 |
ALB223 | aagacatccaaccgaccaag | cacgacgttgtaaaacgacactgctgcgtttcgtcaga | aat | 6 | 3 | 7 |
ALB230 | taaaggggcaaattgcaaag | cacgacgttgtaaaacgactcgcaatgaaaccctaggtc | atct | 6 | 3 | 13 |
ALB257 | tgtgatggattttgcttcca | cacgacgttgtaaaacgactgtcgctcctgcatctattg | aatt | 5 | 3 | 10 |
ALB273 | tccatctccatcatcccttc | cacgacgttgtaaaacgactggggaacatttccatcatt | ga | 8 | 3 | 4 |
ALB278 | cctgggttaattatggcctgt | cacgacgttgtaaaacgaccgtatctattctcacctccgatg | tc | 8 | 3 | 5 |
ALB311 | cgtcgtcttcaggtctttcc | cacgacgttgtaaaacgaccctaacagcttccgtctcca | ga | 6 | 3 | 9 |
ALB348 | tgtgtgccgaactagtgaaag | cacgacgttgtaaaacgactccaggccctcacatatctc | tc | 13 | 4 | 13 |
ALB349 | ggatggctctcaaggtcact | tcacgacgttgtaaaacgacgagcatgtgggtgtgattt | tc | 13 | 5 | 16 |
ALB355 | cagcaggtcctcgtactcct | cacgacgttgtaaaacgacgatacatcccagccattaatcc | ctt | 11 | 4 | 16 |
ALB372 | ggtgcgcaatggagatagat | cacgacgttgtaaaacgactctaggctccgttccgagta | tatc | 9 | 4 | 13 |
ALB374 | aatggtggatctgcagaagg | cacgacgttgtaaaacgactgctgcttcttttgtcgatg | gtt | 9 | 3 | 7 |
ALB376 | gggttccacctgtcagaaaa | cacgacgttgtaaaacgacatgccaaatgggactgtttc | ac | 9 | 3 | 6 |
ALB445 | caccagcgtttacgtagcag | cacgacgttgtaaaacgactgttcagtgggtcgagtcaa | gaaa | 7 | 3 | 11 |
ALB454 | cttcacccagctgctcatc | cacgacgttgtaaaacgactgagtcgaataagccggaag | tgc | 7 | 3 | 9 |
ALB461 | gggccgtctgcatttatcat | cacgacgttgtaaaacgaccagaactgtcagtcccctttg | at | 7 | 3 | 6 |
ALB467 | ggcgtcacgaaagaagagaa | cacgacgttgtaaaacgacccccaccagctctatgaaat | at | 7 | 3 | 6 |
ALB486 | ggccagccatgttagactgt | cacgacgttgtaaaacgactaatccgcgtcctctcttgt | ag | 6 | 3 | 3 |
ALB514 | aaaagaaccccgacctgaat | cacgacgttgtaaaacgacacggagggagtacaccacaa | aag | 6 | 3 | 15 |
| Â | Â | Â | Â | Â | Avg = 3.3 | Avg = 10.2 |