Table 2 MicroRNA predictions matching un-annotated ESTs
VvGI EST Identifier | EST sequence length | miRNA ID | Precursor length | Precursor position in EST sequence | Orientation | miRNA |
|---|---|---|---|---|---|---|
EC979165 (singlet) | 296 | 279806 | 108 | 144–251 | +/+ | miR-397 |
315332 | 104 | 249–146 | +/- | |||
FC057876 (singlet) | 429 | 193758 | 100 | 190–289 | +/+ | |
272427 | 100 | 190–289 | +/+ | |||
383142 | 100 | 190–289 | +/+ | |||
389989 | 100 | 190–289 | +/+ | |||
TC83445 (contig) | 755 | 746258 | 116 | 80–195 | +/+ | |
TC84091 (contig) | 657 | 4592 | 122 | 362–483 | +/+ | miR-172 |
256855 | 122 | 362–483 | +/+ | miR-172 | ||
594486 | 112 | 478–367 | +/- | |||
TC86536 (contig) | 1066 | 126771 | 83 | 566–484 | +/- | miR-159 |
567065 | 85 | 567–483 | +/- | |||
TC89289 (contig) | 560 | 191738 | 124 | 293–170 | +/- | |
191739 | 124 | 293–170 | +/- | |||
205575 | 124 | 293–170 | +/- | |||
229080 | 124 | 170–293 | +/+ | |||
234968 | 132 | 166–297 | +/+ | |||
234999 | 132 | 166–297 | +/+ | |||
238365 | 124 | 170–293 | +/+ | |||
238366 | 124 | 170–293 | +/+ | |||
247518 | 132 | 166–297 | +/+ | |||
247519 | 132 | 166–297 | +/+ | |||
247538 | 132 | 166–297 | +/+ | |||
247539 | 132 | 166–297 | +/+ | |||
553182 | 124 | 293–170 | +/- | |||
553183 | 124 | 293–170 | +/- | |||
562443 | 124 | 293–170 | +/- | |||
750086 | 126 | 294–169 | +/- | |||
750087 | 126 | 294–169 | +/- | |||
761906 | 126 | 294–169 | +/- | |||
TC90232 (contig) | 724 | 635488 | 137 | 75–211 | +/+ | |
TC96134 (contig) | 425 | 256915 | 140 | 153–14 | +/- |