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Table 3 Enumerative selection of novel motifs overrepresented in the promoters of OsWRKY13-regulated genes

From: Exploring transcriptional signalling mediated by OsWRKY13, a potential regulator of multiple physiological processes in rice

Gene cluster

Motif

Consensus sequence

Stranda

P-valueb

Upregulated

novel 1

TCTCGGGCAA

ss

4.07e-06

 

novel 2

GCACGGCA

bs

4.51e-06

 

novel 3

ACAGGACTTA

bs

5.14e-06

 

novel 4

CTATTTCGCA

ss

6.31e-06

 

novel 5

GCTTGCGA

ss

8.33e-06

Downregulated

novel 6

CGATCGAT

ss/bs

1.40e-06

 

novel 7

CAGCTAGCT

bs/ss

2.65e-06

 

novel 8

TATATATA

bs/ss

4.31e-06

 

novel 9

TGTGTGTGGTT

bs/ss

6.17e-06

 

novel 10

TGCTTTT

ss

1.71e-06

 

novel 11

TGGCCTAGAA

bs

5.35e-06

 

novel 12

ACATGCCTG

ss

8.58e-06

  1. aThe letters "bs" or "ss" designate whether an element was detected as overrepresented on both strands (bs) or on the sense strand (ss); "bs/ss" refers to consensus sequence from bs and ss with priority on both strands and "ss/bs" with priority on the sense strand.
  2. bThe P-value of motif with bs/ss or ss/bs annotation was calculated by average of the P-values for bb and ss.
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BMC Plant Biology

ISSN: 1471-2229

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