TY - JOUR AU - Lal, S. AU - Oetjens, M. AU - Hannah, C. L. PY - 2009 DA - 2009// TI - Helitrons: Enigmatic abductors and mobilizers of host genome sequences JO - Plant Science VL - 176 UR - https://doi.org/10.1016/j.plantsci.2008.11.004 DO - 10.1016/j.plantsci.2008.11.004 ID - Lal2009 ER - TY - JOUR AU - Kapitonov, V. AU - Jurka, J. PY - 2007 DA - 2007// TI - Helitrons on a roll: eukaryotic rolling-circle transposons JO - Trends in Genetics VL - 23 UR - https://doi.org/10.1016/j.tig.2007.08.004 DO - 10.1016/j.tig.2007.08.004 ID - Kapitonov2007 ER - TY - JOUR AU - Kapitonov, V. AU - Jurka, J. PY - 2001 DA - 2001// TI - Rolling-circle transposons in eukaryotes JO - Proc Natl Acad Sci USA VL - 98 UR - https://doi.org/10.1073/pnas.151269298 DO - 10.1073/pnas.151269298 ID - Kapitonov2001 ER - TY - JOUR AU - Brunner, S. AU - Pea, G. AU - Rafalski, A. PY - 2005 DA - 2005// TI - Origins, genetic organization and transcription of a family of non-autonomous helitron elements in maize JO - Plant J VL - 43 UR - https://doi.org/10.1111/j.1365-313X.2005.02497.x DO - 10.1111/j.1365-313X.2005.02497.x ID - Brunner2005 ER - TY - JOUR AU - Du, C. AU - Caronna, J. AU - He, L. AU - Dooner, H. PY - 2008 DA - 2008// TI - Computational prediction and molecular confirmation of Helitron transposons in the maize genome JO - BMC Genomics VL - 9 UR - https://doi.org/10.1186/1471-2164-9-51 DO - 10.1186/1471-2164-9-51 ID - Du2008 ER - TY - JOUR AU - Tempel, S. AU - Nicolas, J. AU - El Amrani, A. AU - Couee, I. PY - 2007 DA - 2007// TI - Model-based identification of Helitrons results in a new classification of their families in Arabidopsis thaliana JO - Gene VL - 403 UR - https://doi.org/10.1016/j.gene.2007.06.030 DO - 10.1016/j.gene.2007.06.030 ID - Tempel2007 ER - TY - CHAP AU - Zuccolo, A. AU - Sebastian, A. AU - Talag, J. AU - Yu, Y. S. AU - Kim, H. R. AU - Collura, K. AU - Kudrna, D. AU - Wing, R. A. PY - 2007 DA - 2007// TI - Transposable element distribution, abundance and role in genome size variation in the genus Oryza BT - BMC Evolutionary Biology ID - Zuccolo2007 ER - TY - JOUR AU - Gupta, S. AU - Gallavotti, A. AU - Stryker, G. AU - Schmidt, R. AU - Lal, S. PY - 2005 DA - 2005// TI - A novel class of Helitron-related transposable elements in maize contain portions of multiple pseudogenes JO - Plant Mol Biol VL - 57 UR - https://doi.org/10.1007/s11103-004-6636-z DO - 10.1007/s11103-004-6636-z ID - Gupta2005 ER - TY - JOUR AU - Jameson, N. AU - Georgelis, N. AU - Fouladbash, E. AU - Martens, S. AU - Hannah, L. AU - Lal, S. PY - 2008 DA - 2008// TI - Helitron mediated amplification of cytochrome P450 monoxygenase gene in maize JO - Plant Mol Biol VL - 67 UR - https://doi.org/10.1007/s11103-008-9318-4 DO - 10.1007/s11103-008-9318-4 ID - Jameson2008 ER - TY - JOUR AU - Lai, J. AU - Li, Y. AU - Messing, J. AU - Dooner, H. PY - 2005 DA - 2005// TI - Gene movement by Helitron transposons contributes to the haplotype variability of maize JO - Proc Natl Acad Sci USA VL - 102 UR - https://doi.org/10.1073/pnas.0502923102 DO - 10.1073/pnas.0502923102 ID - Lai2005 ER - TY - JOUR AU - Lal, S. AU - Giroux, M. AU - Brendel, V. AU - Vallejos, C. AU - Hannah, L. PY - 2003 DA - 2003// TI - The maize genome contains a Helitron insertion JO - Plant Cell VL - 15 UR - https://doi.org/10.1105/tpc.008375 DO - 10.1105/tpc.008375 ID - Lal2003 ER - TY - JOUR AU - Morgante, M. AU - Brunner, S. AU - Pea, G. AU - Fengler, K. AU - Zuccolo, A. AU - Rafalski, A. PY - 2005 DA - 2005// TI - Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize JO - Nat Genet VL - 37 UR - https://doi.org/10.1038/ng1615 DO - 10.1038/ng1615 ID - Morgante2005 ER - TY - JOUR AU - Choi, J. AU - Hoshino, A. AU - Park, K. AU - Park, I. AU - Iida, S. PY - 2007 DA - 2007// TI - Spontaneous mutations caused by a Helitron transposon, Hel-It1, in morning glory, Ipomoea tricolor JO - Plant J VL - 49 UR - https://doi.org/10.1111/j.1365-313X.2006.03007.x DO - 10.1111/j.1365-313X.2006.03007.x ID - Choi2007 ER - TY - JOUR AU - Evans, G. AU - Rees, H. AU - Snell, C. AU - Sun, S. PY - 1972 DA - 1972// TI - The relationship between nuclear DNA amount and the duration of the mitotic cycle JO - Chromosomes Today VL - 3 ID - Evans1972 ER - TY - STD TI - Plant DNA C-values Database. [http://data.kew.org/cvalues/]. UR - http://data.kew.org/cvalues/ ID - ref15 ER - TY - JOUR AU - Bennett, M. AU - Leitch, I. PY - 2005 DA - 2005// TI - Nuclear DNA amounts in angiosperms: Progress, problems and prospects JO - Annals of Botany VL - 95 UR - https://doi.org/10.1093/aob/mci003 DO - 10.1093/aob/mci003 ID - Bennett2005 ER - TY - JOUR AU - Bennett, M. AU - Smith, J. PY - 1976 DA - 1976// TI - Nuclear DNA amounts in angiosperms JO - Philosophical Transactions of the Royal Society of London Series B-Biological Sciences VL - 274 UR - https://doi.org/10.1098/rstb.1976.0044 DO - 10.1098/rstb.1976.0044 ID - Bennett1976 ER - TY - JOUR AU - Araki, T. AU - Komeda, Y. PY - 1993 DA - 1993// TI - Analysis of the Role of the Late-Flowering Locus, Gl, in the Flowering of Arabidopsis-Thaliana JO - Plant J VL - 3 UR - https://doi.org/10.1046/j.1365-313X.1993.t01-15-00999.x DO - 10.1046/j.1365-313X.1993.t01-15-00999.x ID - Araki1993 ER - TY - JOUR AU - Park, D. AU - Somers, D. AU - Kim, Y. AU - Choy, Y. AU - Lim, H. AU - Soh, M. AU - Kim, H. AU - Kay, S. AU - Nam, H. PY - 1999 DA - 1999// TI - Control of circadian rhythms and photoperiodic flowering by the Arabidopsis GIGANTEAgene JO - Science VL - 285 UR - https://doi.org/10.1126/science.285.5433.1579 DO - 10.1126/science.285.5433.1579 ID - Park1999 ER - TY - JOUR AU - Kim, W. AU - Fujiwara, S. AU - Suh, S. AU - Kim, J. AU - Kim, Y. AU - Han, L. AU - David, K. AU - Putterill, J. AU - Nam, H. AU - Somers, D. PY - 2007 DA - 2007// TI - ZEITLUPE is a circadian photoreceptor stabilized by GIGANTEA in blue light JO - Nature VL - 449 UR - https://doi.org/10.1038/nature06132 DO - 10.1038/nature06132 ID - Kim2007 ER - TY - JOUR AU - Martin-Tryon, E. AU - Kreps, J. AU - Harmer, S. PY - 2007 DA - 2007// TI - GIGANTEA acts in blue light signaling and has biochemically separable roles in circadian clock and flowering time regulation JO - Plant Physiol VL - 143 UR - https://doi.org/10.1104/pp.106.088757 DO - 10.1104/pp.106.088757 ID - Martin-Tryon2007 ER - TY - JOUR AU - Oliverio, K. AU - Crepy, M. AU - Martin-Tryon, E. AU - Milich, R. AU - Harmer, S. AU - Putterill, J. AU - Yanovsky, M. AU - Casal, J. PY - 2007 DA - 2007// TI - GIGANTEA regulates phytochrome A-mediated photomorphogenesis independently of its role in the circadian clock JO - Plant Physiol VL - 144 UR - https://doi.org/10.1104/pp.107.097048 DO - 10.1104/pp.107.097048 ID - Oliverio2007 ER - TY - JOUR AU - Sawa, M. AU - Nusinow, D. AU - Kay, S. AU - Imaizumi, T. PY - 2007 DA - 2007// TI - FKF1 and GIGANTEA complex formation is required for day-length measurement in Arabidopsis JO - Science VL - 318 UR - https://doi.org/10.1126/science.1146994 DO - 10.1126/science.1146994 ID - Sawa2007 ER - TY - JOUR AU - Cockram, J. AU - Jones, H. AU - Leigh, F. AU - O'Sullivan, D. AU - Powell, W. AU - Laurie, D. AU - Greenl, A. PY - 2007 DA - 2007// TI - Control of flowering time in temperate cereals: genes, domestication, and sustainable productivity JO - J Exp Bot VL - 58 UR - https://doi.org/10.1093/jxb/erm042 DO - 10.1093/jxb/erm042 ID - Cockram2007 ER - TY - JOUR AU - Laurie, D. AU - Griffiths, S. AU - Dunford, R. AU - Christodoulou, V. AU - Taylor, S. AU - Cockram, J. AU - Beales, J. AU - Turner, A. PY - 2004 DA - 2004// TI - Comparative genetic approaches to the identification of flowering time genes in temperate cereals JO - Field Crops Research VL - 90 UR - https://doi.org/10.1016/j.fcr.2004.07.007 DO - 10.1016/j.fcr.2004.07.007 ID - Laurie2004 ER - TY - JOUR AU - Hayama, R. AU - Coupland, G. PY - 2004 DA - 2004// TI - The molecular basis of diversity in the photoperiodic flowering responses of Arabidopsis and rice JO - Plant Physiol VL - 135 UR - https://doi.org/10.1104/pp.104.042614 DO - 10.1104/pp.104.042614 ID - Hayama2004 ER - TY - JOUR AU - Hayama, R. AU - Yokoi, S. AU - Tamaki, S. AU - Yano, M. AU - Shimamoto, K. PY - 2003 DA - 2003// TI - Adaptation of photoperiodic control pathways produces short-day flowering in rice JO - Nature VL - 422 UR - https://doi.org/10.1038/nature01549 DO - 10.1038/nature01549 ID - Hayama2003 ER - TY - JOUR AU - Martin, J. AU - Storgaard, M. AU - Andersen, C. AU - Nielsen, K. PY - 2004 DA - 2004// TI - Photoperiodic regulation of flowering in perennial ryegrass involving a CONSTANS-like homolog JO - Plant Mol Biol VL - 56 UR - https://doi.org/10.1007/s11103-004-2647-z DO - 10.1007/s11103-004-2647-z ID - Martin2004 ER - TY - JOUR AU - Murakami, M. AU - Tago, Y. AU - Yamashino, T. AU - Mizuno, T. PY - 2007 DA - 2007// TI - Comparative overviews of clock-associated genes of Arabidopsis thaliana and Oryza sativa JO - Plant Cell Physiol VL - 48 UR - https://doi.org/10.1093/pcp/pcl043 DO - 10.1093/pcp/pcl043 ID - Murakami2007 ER - TY - JOUR AU - Olsen, P. AU - Lenk, I. AU - Jensen, C. AU - Petersen, K. AU - Andersen, C. AU - Didion, T. AU - Nielsen, K. PY - 2006 DA - 2006// TI - Analysis of two heterologous flowering genes in Brachypodium distachyondemonstrates its potential as a grass model plant JO - Plant Science VL - 170 UR - https://doi.org/10.1016/j.plantsci.2006.01.012 DO - 10.1016/j.plantsci.2006.01.012 ID - Olsen2006 ER - TY - JOUR AU - Yan, L. PY - 2006 DA - 2006// TI - The wheat and barley vernalization gene VRN3 is an orthologue of FT JO - Proc Natl Acad Sci USA VL - 103 UR - https://doi.org/10.1073/pnas.0607142103 DO - 10.1073/pnas.0607142103 ID - Yan2006 ER - TY - JOUR AU - Dunford, R. AU - Griffiths, S. AU - Christodoulou, V. AU - Laurie, D. PY - 2005 DA - 2005// TI - Characterisation of a barley (Hordeum vulgare L) homologue of the Arabidopsis flowering time regulator GIGANTEA JO - Theor Appl Genet VL - 110 UR - https://doi.org/10.1007/s00122-004-1912-5 DO - 10.1007/s00122-004-1912-5 ID - Dunford2005 ER - TY - JOUR AU - Zhao, X. AU - Liu, M. AU - Li, J. AU - Guan, C. AU - Zhang, X. PY - 2005 DA - 2005// TI - The wheat TaGI1, involved in photoperiodic flowering, encodes an Arabidopsis GIortholog JO - Plant Mol Biol VL - 58 UR - https://doi.org/10.1007/s11103-005-4162-2 DO - 10.1007/s11103-005-4162-2 ID - Zhao2005 ER - TY - JOUR AU - Miller, T. AU - Muslin, E. H. AU - Dorweiler, J. PY - 2008 DA - 2008// TI - A maize CONSTANS -like gene, conz1, exhibits distinct diurnal expression patterns in varied photoperiods JO - Planta VL - 227 UR - https://doi.org/10.1007/s00425-008-0709-1 DO - 10.1007/s00425-008-0709-1 ID - Miller2008 ER - TY - JOUR AU - Huang, S. AU - Sirikhachornkit, A. AU - Su, X. AU - Faris, J. AU - Gill, B. AU - Haselkorn, R. AU - Gornicki, P. PY - 2002 DA - 2002// TI - Phylogenetic analysis of the acetyl-CoA carboxylase and 3-phosphoglycerate kinase loci in wheat and other grasses JO - Plant Mol Biol VL - 48 UR - https://doi.org/10.1023/A:1014868320552 DO - 10.1023/A:1014868320552 ID - Huang2002 ER - TY - JOUR AU - Rabinowicz, P. AU - Schutz, K. AU - Dedhia, N. AU - Yordan, C. AU - Parnell, L. AU - Stein, L. AU - McCombie, W. AU - Martienssen, R. PY - 1999 DA - 1999// TI - Differential methylation of genes and retrotransposons facilitates shotgun sequencing of the maize genome JO - Nat Genet VL - 23 UR - https://doi.org/10.1038/15479 DO - 10.1038/15479 ID - Rabinowicz1999 ER - TY - CHAP AU - Warek, U. AU - Bedell, J. AU - Budiman, M. AU - Nunberg, A. AU - Citek, R. AU - Robbins, D. AU - Lakey, N. AU - Rabinowicz, P. ED - Humphreys, M. PY - 2005 DA - 2005// TI - The efficacy of GeneThresher(R)methylation filtering technology in the plant kingdom BT - Molecular Breeding for the Genetic Improvement of Forage Crops and Turf PB - Wageningen Academic Publishers CY - Wageningen ID - Warek2005 ER - TY - JOUR AU - Donnison, I. AU - O'Sullivan, D. AU - Thomas, A. AU - Canter, P. AU - Moore, B. AU - Armstead, I. AU - Thomas, H. AU - Edwards, K. AU - King, I. PY - 2005 DA - 2005// TI - Construction of a Festuca pratensis BAC library for map-based cloning in Festuloliumsubstitution lines JO - Theor Appl Genet VL - 110 UR - https://doi.org/10.1007/s00122-004-1870-y DO - 10.1007/s00122-004-1870-y ID - Donnison2005 ER - TY - JOUR AU - Farrar, K. AU - Asp, T. AU - Lubberstedt, T. AU - Xu, M. AU - Thomas, A. AU - Christiansen, C. AU - Humphreys, M. AU - Donnison, I. PY - 2007 DA - 2007// TI - Construction of two Lolium perenneBAC libraries and identification of BACs containing candidate genes for disease resistance and forage quality JO - Molecular Breeding VL - 19 UR - https://doi.org/10.1007/s11032-006-9036-z DO - 10.1007/s11032-006-9036-z ID - Farrar2007 ER - TY - JOUR AU - Armstead, I. AU - Huang, L. AU - King, J. AU - Ougham, H. AU - Thomas, H. AU - King, I. PY - 2007 DA - 2007// TI - Rice pseudomolecule-anchored cross-species DNA sequence alignments indicate regional genomic variation in expressed sequence conservation JO - BMC Genomics VL - 8 UR - https://doi.org/10.1186/1471-2164-8-283 DO - 10.1186/1471-2164-8-283 ID - Armstead2007 ER - TY - JOUR AU - Gill, G. AU - Wilcox, P. AU - Whittaker, D. AU - Winz, R. AU - Bickerstaff, P. AU - Echt, C. AU - Kent, J. AU - Humphreys, M. AU - Elborough, K. AU - Gardner, R. PY - 2006 DA - 2006// TI - A framework linkage map of perennial ryegrass based on SSR markers JO - Genome VL - 49 UR - https://doi.org/10.1139/G05-120 DO - 10.1139/G05-120 ID - Gill2006 ER - TY - JOUR AU - Turner, L. B. AU - Cairns, A. J. AU - Armstead, I. P. AU - Ashton, J. AU - Skot, K. AU - Whittaker, D. AU - Humphreys, M. O. PY - 2006 DA - 2006// TI - Dissecting the regulation of fructan metabolism in perennial ryegrass (Lolium perenne) with quantitative trait locus mapping JO - New Phytol VL - 169 UR - https://doi.org/10.1111/j.1469-8137.2005.01575.x DO - 10.1111/j.1469-8137.2005.01575.x ID - Turner2006 ER - TY - CHAP AU - Van Ooijen, J. AU - Boer, M. AU - Jansen, R. AU - Maliepaard, C. PY - 2001 DA - 2001// BT - JoinMap®3.0, Software for the calculation of genetic linkage maps PB - Plant Research International CY - Wageningen, the Netherlands ID - Van Ooijen2001 ER - TY - STD TI - EMBL-EBI, ClustalW. [http://www.ebi.ac.uk/Tools/clustalw/index.html]. UR - http://www.ebi.ac.uk/Tools/clustalw/index.html ID - ref44 ER - TY - JOUR AU - Schuler, G. AU - Altschul, S. AU - Lipman, D. PY - 1991 DA - 1991// TI - A workbench for multiple alignment construction and analysis JO - Proteins: Structure, Function, and Bioinformatics VL - 9 UR - https://doi.org/10.1002/prot.340090304 DO - 10.1002/prot.340090304 ID - Schuler1991 ER - TY - STD TI - NCBI BLAST ftp directory. [ftp://ftp.ncbi.nlm.nih.gov/blast/executables/]. UR - ftp://ftp.ncbi.nlm.nih.gov/blast/executables/ ID - ref46 ER -