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Table 2 SCAR and CAPS markers developed from AFLP fragments linked to the D locus

From: Phenotypic and fine genetic characterization of the D locus controlling fruit acidity in peach

AFLP markersize in bp1

SCAR marker

Primer sequence (5'-3')

Size1 (bp)

P2

Annealing temp. (Ā°C)

Enzyme

pGC-AGG430J-450F

D-Scar0

F GTGCACAGCTATCTCCTTTC

160 (J)

SSR

52

no

Ā Ā 

R CTCATGGCAACAACATATTC

175 (F)

Ā Ā Ā 

pAC-AAC402J-412F

D-Scar1

F GGGATGTGGGTATGTCGTA

345 (J)

SSR

55

no

Ā Ā 

R ACAAGGAGGAAGCTCTGG

364 (F)

Ā Ā Ā 

pGG-TAC215J-221F

D-Scar2

F CCTTACGTCTACGACGACAAC

142 (J)

InDel

54

no

Ā Ā 

R TGAGTCCTGAGTAATACTGTTCATGTG

148 (F)

Ā Ā Ā 

pTC-GTA218F-219J

D-Scar3

F GTTGACATGAAACAAATGACATTG

180 (J, F)

SNP

52

AccI

Ā Ā 

R CAGTCGTTCTTGTAGTTCACATGC

Ā Ā Ā Ā 

pTG-TGG470J

D-Scar6

F CATGGCCCCATCTTTTCAC

92 (J)

InDel

55

no

Ā Ā 

R GACCAGTTGCATCTCATTCATATTGG

98 (F)

Ā Ā Ā 

pTC-CTG470J

D-Scar7

F CTGGTCATCTACCGTCTC

334 (J, F)

SNP

55

MseI

Ā Ā 

R TCCAACTCCAAGGCTTGC

Ā Ā Ā Ā 
  1. 1 (J) 'Ferjalou JalousiaĀ®', (F) 'Fantasia', 2 Polymorphism observed.