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Table 2 List of the 15 most abundant bean contigs with the highest number of sequences

From: Generation of Phaseolus vulgaris ESTs and investigation of their regulation upon Uromyces appendiculatus infection

Total No. of ESTs Contig annotation Category genus gene annotation*
496 CL1Contig48 primary metabolism common bean Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RubisCO activase)
358 CL1Contig437 Amino acid and protein metabolism common bean large subunit 26S ribosomal RNA gene
318 CL1Contig308 Amino acid and protein metabolism Lotus large subunit 26S ribosomal RNA gene
220 CL1Contig62 energy common bean Chlorophyll a/b-binding protein
175 CL1Contig88 primary metabolism common bean Glyceraldehyde-3-phosphate dehydrogenase A, chloroplast precursor (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A)
164 CL1Contig147 energy common bean LHCII type II chlorophyll a/b-binding protein
151 CL1Contig39 Amino acid and protein metabolism common bean Cysteine protease
143 CL2Contig1 energy common bean Oxygen-evolving enhancer protein 1, chloroplast precursor (33 kDa subunit of oxygen evolving system of photosystem II)
121 CL1Contig159 Amino acid and protein metabolism common bean Human ribosomal DNA complete repeating unit
106 CL1Contig89 oxidation common bean glycolate oxidase. (Lens culinaris)
101 CL1Contig123 primary metabolism common bean Glyceraldehyde 3-phosphate dehydrogenase
98 CL1Contig301 primary metabolism common bean Plastidic aldolase
92 CL2Contig2 energy common bean Oxygen-evolving enhancer protein 1, chloroplast precursor (33 kDa subunit of oxygen evolving system of photosystem II)
88 CL3Contig1 Amino acid and protein metabolism common bean T6D22.2
80 CL1Contig218 oxidation Soybean F1E22.18
  1. * Based on the BlastX hits (E value > e -20) with ESTs deposited in the dbEST at NCBI
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BMC Plant Biology

ISSN: 1471-2229

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