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Table 2 List of plant RPD3/HDA1 superfamily HDAs studied for phylogenetic analysis

From: Phylogenetic analysis, subcellular localization, and expression patterns of RPD3/HDA1 family histone deacetylases in plants

    

Oryza sativa

  
 

Arabidopsis thaliana

Populus trichocarpa

Pinus taeda

indica

japon.*

Zea mays

Physcomitrella patens

Class I

AtHDA7

PtHDA902

PiHDA1801

OsHDA2202

OsHDA701

ZmHDA116

PpHDA1504

 

AtHDA9

PtHDA903

 

OsHDA2204

OsHDA702

ZmHDA102

PpHDA1505

 

AtHDA10

PtHDA904

 

OsHDA2205

OsHDA703

ZmHDA101

PpHDA1506

 

AtHDA17

PtHDA908

 

OsHDA2201

OsHDA705

ZmHDA119

 
 

AtHDA19

PtHDA909

 

OsHDA2206

OsHDA707

ZmHDA108

 
    

OsHDA2207

OsHDA709

  
    

OsHDA2208

OsHDA710

  
     

OsHDA711

  

Class II

AtHDA5

PtHDA906

 

OsHDA2209

OsHDA704

ZmHDA109

PpHDA1501

 

AtHDA8

PtHDA907

 

OsHDA2213

OsHDA713

ZmHDA110

PpHDA1510

 

AtHDA14

PtHDA901

 

OsHDA2211

OsHDA714

ZmHDA115

PpHDA1511

 

AtHDA15

PtHDA912

 

OsHDA2212

 

ZmHDA117

PpHDA1509

 

AtHDA18

PtHDA905

 

OsHDA2214

 

ZmHDA118

PpHDA1508

Class IV

AtHDA2*

PtHDA910

PiHDA1802

OsHDA2210

OsHDA706

ZmHDA120

PpHDA1502

       

PpHDA1503

Total

12

11

2

13

12

11

10

  1. * RPD3/HDA1 family histone deacetylases from Oryza sativa japonicum were referenced from Fu et al (2007) where OsHDA704, OsHDA713, and OsHDA714 were included in the analyses in addition to the HDAs from Oryza sativa indica.