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Table 2 List of identified putative transposable elements in the C. canephora BAC 46C02.

From: Microcollinearity in an ethylene receptor coding gene region of the Coffea canephora genome is extensively conserved with Vitis vinifera and other distant dicotyledonous sequenced genomes

Class

Repeat Type

group

Number

Name

CoffeaEST BLAST hits (>10e-5)

Coffeagenomic sequence BLAST hits (>10e-5)

I

Non-LTR retrotransposon

LINE

1

CcRT_Pricilla

0

0

II

Transposons

Non-autonomous transposons

5

CcTR_Arnaud-1

0

3

    

CcTR_Arnaud-2

0

0

    

CcTR_Deless-1

8

21

    

CcTR_Deless-2

2

7

    

CcTR_Philippe

7

2

 

MITEs

  

CcMT_Alex-1

40

22

  

!

 

CcMT_Alex-2

49

25

  

!

 

CcMT_Anis-1

13

8

  

!

 

CcMT_Anis-2

8

7

  

!

 

CcMT_Anis-3

11

8

  

!

 

CcMT_Daniel-1

17

6

  

!

 

CcMT_Daniel-2

8

12

  

!

 

CcMT_Daniel-3

15

15

  

!

 

CcMT_Gerard-1

40

21

  

!

 

CcMT_Gerard-2

37

14

  

!

 

CcMT_Jose-1

1

8

  

!

 

CcMT_Jose-2

4

7

  

!

 

CcMT_Jose-3

0

0

  

!

 

CcMT_Jose-4

0

1

  

!

 

CcMT_Richard

1

0

  

!

 

CcMT_Serge

1

9

  

!

 

CcMT_Stephane

1

0

Total

  

23

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