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Table 2 Characteristics of the gene data set for phylogenetic analysis and corresponding GenBank accession numbers

From: A recent duplication revisited: phylogenetic analysis reveals an ancestral duplication highly-conserved throughout the Oryza genus and beyond

  A B C D E F G H I
Mean dS 0.130 0.040 0.100 0.120 0.130 0.150 0.050 0.080 0.090
Mean dN 0.020 0.050 0.010 0.020 0.100 0.010 0.060 0.010 0.020
Mean K 0.221 0.084 0.234 0.188 0.141 0.236 0.148 0.187 0.208
Parsimony informative sites 27 76 23 84 150 68 67 169 104
DIPs-number of InDel events 6 43 35 83 66 28 17 106 93
Transition/Transversion ratio 3.72 2.2 1.51 3.2 1.1 3.29 1.17 3.1 0.78
Accessions [Genbank:FJ958xxx] 202-207 208-225 226-233 234-249 250-264 265-271 272-278 279-293 294-309
  1. The genes in bold were amplified on the complete sample set whereas the others were amplified on the more distant species only. Mean dS, mean dN and mean K are the average synonymous, non-synonymous and non-coding substitutions rates values for all the pairwise comparisons in one data set.