A recent duplication revisited: phylogenetic analysis reveals an ancestral duplication highly-conserved throughout the Oryza genus and beyond

Table 2 Characteristics of the gene data set for phylogenetic analysis and corresponding GenBank accession numbers

	A	B	C	D	E	F	G	H	I
Mean dS	0.130	0.040	0.100	0.120	0.130	0.150	0.050	0.080	0.090
Mean dN	0.020	0.050	0.010	0.020	0.100	0.010	0.060	0.010	0.020
Mean K	0.221	0.084	0.234	0.188	0.141	0.236	0.148	0.187	0.208
Parsimony informative sites	27	76	23	84	150	68	67	169	104
DIPs-number of InDel events	6	43	35	83	66	28	17	106	93
Transition/Transversion ratio	3.72	2.2	1.51	3.2	1.1	3.29	1.17	3.1	0.78
Accessions [Genbank:FJ958xxx]	202-207	208-225	226-233	234-249	250-264	265-271	272-278	279-293	294-309

The genes in bold were amplified on the complete sample set whereas the others were amplified on the more distant species only. Mean dS, mean dN and mean K are the average synonymous, non-synonymous and non-coding substitutions rates values for all the pairwise comparisons in one data set.

ISSN: 1471-2229