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Table 6 Examples of S. lycopersicum TCs that are independently splice-aligned along tomato and potato BACs.

From: SolEST database: a "one-stop shop" approach to the study of Solanaceae transcriptomes

    S.lycopersicum BACs S.tuberosum BACs
  TC ID UniProtKB Annotation # chr BAC ID start stop # chr BAC ID start stop
A SOLLC004853:Contig2   1 AC171727.1 13505 14336 - - - -
  SOLLC004853:Contig1   1 AC171727.1 13540 14538 - - - -
  SOLLC005165:Contig75 Q8L9T5 | ATL3F_ARATH | RING-H2 finger protein ATL3F OS = Arabidopsis thaliana 1 AC171727.1 36486 37772 - - - -
  SOLLC007669:Contig1 Q43043 | PME_PETIN | Pectinesterase OS = Petunia integrifolia 1 AC171727.1       
  SOLLC021190:Contig1 Q43043 | PME_PETIN | Pectinesterase OS = Petunia integrifolia 1 AC171727.1 109415 109926 - - - -
  SOLLC020772:Contig1 Q43043 | PME_PETIN | Pectinesterase OS = Petunia integrifolia 1 AC171727.1 121192 121569 - - - -
  SOLLC015580:Contig1 Q43043 | PME_PETIN | Pectinesterase OS = Petunia integrifolia 1 AC171727.1 121518 123321 - - - -
B SOLLC004826:Contig1 Q766C2 | NEP2_NEPGR | Aspartic proteinase nepenthesin-2 OS = Nepenthes gracilis - - - - 5 AC233494.1 5393 6182
  SOLLC021577:Contig1 Q766C3 | NEP1_NEPGR | Aspartic proteinase nepenthesin-1 OS = Nepenthes gracilis - - - - 5 AC233494.1 6647 7214
  SOLLC005426:Contig1   - - - - 5 AC233494.1 10450 13585
  SOLLC007282:Contig1 Q9FT81 | TT8_ARATH | Protein TRANSPARENT TESTA 8 OS = Arabidopsis thaliana - - - - 5 AC233494.1 34176 35673
  SOLLC012069:Contig1 Q94HW3 | DRL11_ARATH | Probable disease resistance protein RDL6/RF9 OS = Arabidopsis thaliana - - - - 5 AC233494.1 48246 53485
  SOLLC024651:Contig1 Q6L400 | R1B16_SOLDE | Putative late blight resistance protein homolog R1B-16 OS = Solanum demissum - - - - 5 AC233494.1 51418 52370
  SOLLC010379:Contig1 Q38950 | 2AAB_ARATH | Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS = Arabidopsis thaliana - - - - 5 AC233494.1 71687 79002
  SOLLC024982:Contig1   - - - - 5 AC233494.1 84414 87845
C SOLLC010896:Contig1   11 AC212431.2 128060 132631 0 AC232103.1 40703 46333
  SOLLC005049:Contig1 Q3ZAF9 | KGUA_DEHE1 | Guanylate kinase OS = Dehalococcoides ethenogenes 11 AC212431.2 137482 138460 0 AC232103.1 33385 34367
  SOLLC032933:Contig1 P54677 | PI4K_DICDI | Phosphatidylinositol 4-kinase OS = Dictyostelium discoideum 11 AC212431.2 159306 163292 0 AC232103.1 13520 17677
D SOLLC001795:Contig1 acc = P43394 entry_name = K502_ACTDE desc = Fruit protein pKIWI502 OS = Actinidia deliciosa 0 CU914756.3 126304 131068 5 AC233527.1 81221 85811
  SOLLC001995:Contig1 acc = P17614 entry_name = ATPBM_NICPL desc = ATP synthase subunit beta, mitochondrial OS = Nicotiana plumbaginifolia 0 CU914756.3 121815 125827 5 AC233527.1 75747 79701
  SOLLC002780:Contig1   0 CU914756.3 132958 137854 5 AC233527.1 87980 93448
  SOLLC002780:Contig2   0 CU914756.3 132996 137857 5 AC233527.1 88066 93451
  SOLLC011112:Contig1 acc = P54086 entry_name = Y194_SYNY3 desc = Uncharacterized protein sll0194 OS = Synechocystis 0 CU914756.3 68182 73146 5 AC233527.1 56111 61611
  SOLLC014928:Contig1 acc = P34552 entry_name = ALX1_CAEEL desc = Apoptosis-linked gene 2-interacting protein X 1 OS = Caenorhabditis elegans 0 CU914756.3 141248 142048 5 AC233527.1 96451 97251
E SOLLC013836:Contig1   11 AC171736.1 46790 49549 11 AC231674.1 1 2996
  SOLLC033755:Contig1 Q5T9S5 | CCD18_HUMAN | Coiled-coil domain-containing protein 18 OS = Homo sapiens 11 AC171736.1 61542 62195 11 AC231674.1 19771 20423
  SOLLC011109:Contig2 Q9FIH9 | CML37_ARATH | Calcium-binding protein CML37 OS = Arabidopsis thaliana 11 AC171736.1 67251 68067 11 AC231674.1 29350 30116
  SOLLC027329:Contig1 Q7Z2Z2 | ETUD1_HUMAN | Elongation factor Tu GTP-binding domain-containing protein 1 OS = Homo sapiens 11 AC171736.1 71740 72558 11 AC231674.1 34634 35449
  SOLLC011285:Contig1   11 AC171736.1 78845 82124 11 AC231674.1 46882 50643
  SOLLC000854:Contig1 Q9D7N9 | APMAP_MOUSE | Adipocyte plasma membrane-associated protein OS = Mus musculus 11 AC171736.1 82643 87091 11 AC231674.1 50695 55627
  SOLLC016421:Contig1 Q6R2K2 | SRF4_ARATH | Protein STRUBBELIG-RECEPTOR FAMILY 4 OS = Arabidopsis thaliana 11 AC171736.1 101708 106816 11 AC231674.1 72838 78011
  SOLLC004514:Contig1 P42824 | DNJH2_ALLPO | DnaJ protein homolog 2 OS = Allium porrum 11 AC171736.1 107145 110458 11 AC231674.1 78559 81871
  SOLLC014445:Contig1 Q9SF32 | IQD1_ARATH | Protein IQ-DOMAIN 1 OS = Arabidopsis thaliana 11 AC171736.1 119739 122235 11 AC231674.1 97126 101323
  SOLLC026   11 AC17 12536 12605 11 AC23 10606 10674
  122:Contig1    1736.1 1 5   1674.1 6 4
  SOLLC013 P16577 | UBC4_WHEAT | 11 AC17 13590 13989 11 AC23 11693 12091
  099:Contig4 Ubiquitin-conjugating enzyme E2-23 kDa OS = Triticum aestivum   1736.1 0 2   1674.1 4 9
F SOLLC014596:Contig1   4 CU914524.3 11054 11642 1 AC233501.1 124622 125217
  SOLLC004364:Contig1 Q9SZA7 | DRL29_ARATH | Probable disease resistance protein At4g33300 OS = Arabidopsis thaliana 4 CU914524.3 19738 21366 1 AC233501.1 115958 117638
  SOLLC003401:Contig2 Q9SZA7 | DRL29_ARATH | Probable disease resistance protein At4g33300 OS = Arabidopsis thaliana 4 CU914524.3 21414 22905 1 AC233501.1 114425 115910
  SOLLC003654:Contig1 Q8GZD4 | NAT3_ARATH | Nucleobase-ascorbate transporter 3 OS = Arabidopsis thaliana 4 CU914524.3 24161 31350 1 AC233501.1 105840 113085
  SOLLC009218:Contig1 Q9S7T8 | SPZX_ARATH | Serpin-ZX OS = Arabidopsis thaliana 4 CU914524.3 34754 37499 1 AC233501.1 100513 103214
  SOLLC010320:Contig1 Q9S7T8 | SPZX_ARATH | Serpin-ZX OS = Arabidopsis thaliana 4 CU914524.3 39986 41937 1 AC233501.1 79650 81701
  SOLLC005339:Contig2 Q9S7T8 | SPZX_ARATH | Serpin-ZX OS = Arabidopsis thaliana 4 CU914524.3 43123 43880 1 AC233501.1 77665 78422
  SOLLC007010:Contig1 Q05085 | CHL1_ARATH | Nitrate/chlorate transporter OS = Arabidopsis thaliana 4 CU914524.3 52979 54985 1 AC233501.1 40918 42609
  SOLLC005747:Contig1 Q05085 | CHL1_ARATH | Nitrate/chlorate transporter OS = Arabidopsis thaliana 4 CU914524.3 56811 57920 1 AC233501.1 41189 42544
  SOLLC008759:Contig1   4 CU914524.3 60617 63084 1 AC233501.1 30324 32692
  SOLLC002208:Contig1 O04348 | TPP1_ARATH | Thylakoidal processing peptidase 1, chloroplastic OS = Arabidopsis thaliana 4 CU914524.3 63803 67165 1 AC233501.1 25016 29581
  SOLLC004022:Contig1   4 CU914524.3 74867 75517 1 AC233501.1 12497 13142
  1. Each selected TC is identified by its ID (TC ID), and a putative functional annotation is associated to it (UniProtKB Annotation). In case of TCs aligned along S. lycopersicum and/or S. tuberosum BACs, the chromosome number (# chr), the BAC accession number from GenBank (BAC ID), and the BAC start and stop coordinates are reported.