Table 6 Examples of S. lycopersicum TCs that are independently splice-aligned along tomato and potato BACs.
From: SolEST database: a "one-stop shop" approach to the study of Solanaceae transcriptomes
| Â | Â | Â | S.lycopersicum BACs | S.tuberosum BACs | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Â | TC ID | UniProtKB Annotation | # chr | BAC ID | start | stop | # chr | BAC ID | start | stop |
A | SOLLC004853:Contig2 | Â | 1 | AC171727.1 | 13505 | 14336 | - | - | - | - |
| Â | SOLLC004853:Contig1 | Â | 1 | AC171727.1 | 13540 | 14538 | - | - | - | - |
| Â | SOLLC005165:Contig75 | Q8L9T5 | ATL3F_ARATH | RING-H2 finger protein ATL3F OS = Arabidopsis thaliana | 1 | AC171727.1 | 36486 | 37772 | - | - | - | - |
| Â | SOLLC007669:Contig1 | Q43043 | PME_PETIN | Pectinesterase OS = Petunia integrifolia | 1 | AC171727.1 | Â | Â | Â | Â | Â | Â |
| Â | SOLLC021190:Contig1 | Q43043 | PME_PETIN | Pectinesterase OS = Petunia integrifolia | 1 | AC171727.1 | 109415 | 109926 | - | - | - | - |
| Â | SOLLC020772:Contig1 | Q43043 | PME_PETIN | Pectinesterase OS = Petunia integrifolia | 1 | AC171727.1 | 121192 | 121569 | - | - | - | - |
| Â | SOLLC015580:Contig1 | Q43043 | PME_PETIN | Pectinesterase OS = Petunia integrifolia | 1 | AC171727.1 | 121518 | 123321 | - | - | - | - |
B | SOLLC004826:Contig1 | Q766C2 | NEP2_NEPGR | Aspartic proteinase nepenthesin-2 OS = Nepenthes gracilis | - | - | - | - | 5 | AC233494.1 | 5393 | 6182 |
| Â | SOLLC021577:Contig1 | Q766C3 | NEP1_NEPGR | Aspartic proteinase nepenthesin-1 OS = Nepenthes gracilis | - | - | - | - | 5 | AC233494.1 | 6647 | 7214 |
| Â | SOLLC005426:Contig1 | Â | - | - | - | - | 5 | AC233494.1 | 10450 | 13585 |
| Â | SOLLC007282:Contig1 | Q9FT81 | TT8_ARATH | Protein TRANSPARENT TESTA 8 OS = Arabidopsis thaliana | - | - | - | - | 5 | AC233494.1 | 34176 | 35673 |
| Â | SOLLC012069:Contig1 | Q94HW3 | DRL11_ARATH | Probable disease resistance protein RDL6/RF9 OS = Arabidopsis thaliana | - | - | - | - | 5 | AC233494.1 | 48246 | 53485 |
| Â | SOLLC024651:Contig1 | Q6L400 | R1B16_SOLDE | Putative late blight resistance protein homolog R1B-16 OS = Solanum demissum | - | - | - | - | 5 | AC233494.1 | 51418 | 52370 |
| Â | SOLLC010379:Contig1 | Q38950 | 2AAB_ARATH | Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS = Arabidopsis thaliana | - | - | - | - | 5 | AC233494.1 | 71687 | 79002 |
| Â | SOLLC024982:Contig1 | Â | - | - | - | - | 5 | AC233494.1 | 84414 | 87845 |
C | SOLLC010896:Contig1 | Â | 11 | AC212431.2 | 128060 | 132631 | 0 | AC232103.1 | 40703 | 46333 |
| Â | SOLLC005049:Contig1 | Q3ZAF9 | KGUA_DEHE1 | Guanylate kinase OS = Dehalococcoides ethenogenes | 11 | AC212431.2 | 137482 | 138460 | 0 | AC232103.1 | 33385 | 34367 |
| Â | SOLLC032933:Contig1 | P54677 | PI4K_DICDI | Phosphatidylinositol 4-kinase OS = Dictyostelium discoideum | 11 | AC212431.2 | 159306 | 163292 | 0 | AC232103.1 | 13520 | 17677 |
D | SOLLC001795:Contig1 | acc = P43394 entry_name = K502_ACTDE desc = Fruit protein pKIWI502 OS = Actinidia deliciosa | 0 | CU914756.3 | 126304 | 131068 | 5 | AC233527.1 | 81221 | 85811 |
| Â | SOLLC001995:Contig1 | acc = P17614 entry_name = ATPBM_NICPL desc = ATP synthase subunit beta, mitochondrial OS = Nicotiana plumbaginifolia | 0 | CU914756.3 | 121815 | 125827 | 5 | AC233527.1 | 75747 | 79701 |
| Â | SOLLC002780:Contig1 | Â | 0 | CU914756.3 | 132958 | 137854 | 5 | AC233527.1 | 87980 | 93448 |
| Â | SOLLC002780:Contig2 | Â | 0 | CU914756.3 | 132996 | 137857 | 5 | AC233527.1 | 88066 | 93451 |
| Â | SOLLC011112:Contig1 | acc = P54086 entry_name = Y194_SYNY3 desc = Uncharacterized protein sll0194 OS = Synechocystis | 0 | CU914756.3 | 68182 | 73146 | 5 | AC233527.1 | 56111 | 61611 |
| Â | SOLLC014928:Contig1 | acc = P34552 entry_name = ALX1_CAEEL desc = Apoptosis-linked gene 2-interacting protein X 1 OS = Caenorhabditis elegans | 0 | CU914756.3 | 141248 | 142048 | 5 | AC233527.1 | 96451 | 97251 |
E | SOLLC013836:Contig1 | Â | 11 | AC171736.1 | 46790 | 49549 | 11 | AC231674.1 | 1 | 2996 |
| Â | SOLLC033755:Contig1 | Q5T9S5 | CCD18_HUMAN | Coiled-coil domain-containing protein 18 OS = Homo sapiens | 11 | AC171736.1 | 61542 | 62195 | 11 | AC231674.1 | 19771 | 20423 |
| Â | SOLLC011109:Contig2 | Q9FIH9 | CML37_ARATH | Calcium-binding protein CML37 OS = Arabidopsis thaliana | 11 | AC171736.1 | 67251 | 68067 | 11 | AC231674.1 | 29350 | 30116 |
| Â | SOLLC027329:Contig1 | Q7Z2Z2 | ETUD1_HUMAN | Elongation factor Tu GTP-binding domain-containing protein 1 OS = Homo sapiens | 11 | AC171736.1 | 71740 | 72558 | 11 | AC231674.1 | 34634 | 35449 |
| Â | SOLLC011285:Contig1 | Â | 11 | AC171736.1 | 78845 | 82124 | 11 | AC231674.1 | 46882 | 50643 |
| Â | SOLLC000854:Contig1 | Q9D7N9 | APMAP_MOUSE | Adipocyte plasma membrane-associated protein OS = Mus musculus | 11 | AC171736.1 | 82643 | 87091 | 11 | AC231674.1 | 50695 | 55627 |
| Â | SOLLC016421:Contig1 | Q6R2K2 | SRF4_ARATH | Protein STRUBBELIG-RECEPTOR FAMILY 4 OS = Arabidopsis thaliana | 11 | AC171736.1 | 101708 | 106816 | 11 | AC231674.1 | 72838 | 78011 |
| Â | SOLLC004514:Contig1 | P42824 | DNJH2_ALLPO | DnaJ protein homolog 2 OS = Allium porrum | 11 | AC171736.1 | 107145 | 110458 | 11 | AC231674.1 | 78559 | 81871 |
| Â | SOLLC014445:Contig1 | Q9SF32 | IQD1_ARATH | Protein IQ-DOMAIN 1 OS = Arabidopsis thaliana | 11 | AC171736.1 | 119739 | 122235 | 11 | AC231674.1 | 97126 | 101323 |
| Â | SOLLC026 | Â | 11 | AC17 | 12536 | 12605 | 11 | AC23 | 10606 | 10674 |
| Â | 122:Contig1 | Â | Â | 1736.1 | 1 | 5 | Â | 1674.1 | 6 | 4 |
| Â | SOLLC013 | P16577 | UBC4_WHEAT | | 11 | AC17 | 13590 | 13989 | 11 | AC23 | 11693 | 12091 |
| Â | 099:Contig4 | Ubiquitin-conjugating enzyme E2-23 kDa OS = Triticum aestivum | Â | 1736.1 | 0 | 2 | Â | 1674.1 | 4 | 9 |
F | SOLLC014596:Contig1 | Â | 4 | CU914524.3 | 11054 | 11642 | 1 | AC233501.1 | 124622 | 125217 |
| Â | SOLLC004364:Contig1 | Q9SZA7 | DRL29_ARATH | Probable disease resistance protein At4g33300 OS = Arabidopsis thaliana | 4 | CU914524.3 | 19738 | 21366 | 1 | AC233501.1 | 115958 | 117638 |
| Â | SOLLC003401:Contig2 | Q9SZA7 | DRL29_ARATH | Probable disease resistance protein At4g33300 OS = Arabidopsis thaliana | 4 | CU914524.3 | 21414 | 22905 | 1 | AC233501.1 | 114425 | 115910 |
| Â | SOLLC003654:Contig1 | Q8GZD4 | NAT3_ARATH | Nucleobase-ascorbate transporter 3 OS = Arabidopsis thaliana | 4 | CU914524.3 | 24161 | 31350 | 1 | AC233501.1 | 105840 | 113085 |
| Â | SOLLC009218:Contig1 | Q9S7T8 | SPZX_ARATH | Serpin-ZX OS = Arabidopsis thaliana | 4 | CU914524.3 | 34754 | 37499 | 1 | AC233501.1 | 100513 | 103214 |
| Â | SOLLC010320:Contig1 | Q9S7T8 | SPZX_ARATH | Serpin-ZX OS = Arabidopsis thaliana | 4 | CU914524.3 | 39986 | 41937 | 1 | AC233501.1 | 79650 | 81701 |
| Â | SOLLC005339:Contig2 | Q9S7T8 | SPZX_ARATH | Serpin-ZX OS = Arabidopsis thaliana | 4 | CU914524.3 | 43123 | 43880 | 1 | AC233501.1 | 77665 | 78422 |
| Â | SOLLC007010:Contig1 | Q05085 | CHL1_ARATH | Nitrate/chlorate transporter OS = Arabidopsis thaliana | 4 | CU914524.3 | 52979 | 54985 | 1 | AC233501.1 | 40918 | 42609 |
| Â | SOLLC005747:Contig1 | Q05085 | CHL1_ARATH | Nitrate/chlorate transporter OS = Arabidopsis thaliana | 4 | CU914524.3 | 56811 | 57920 | 1 | AC233501.1 | 41189 | 42544 |
| Â | SOLLC008759:Contig1 | Â | 4 | CU914524.3 | 60617 | 63084 | 1 | AC233501.1 | 30324 | 32692 |
| Â | SOLLC002208:Contig1 | O04348 | TPP1_ARATH | Thylakoidal processing peptidase 1, chloroplastic OS = Arabidopsis thaliana | 4 | CU914524.3 | 63803 | 67165 | 1 | AC233501.1 | 25016 | 29581 |
| Â | SOLLC004022:Contig1 | Â | 4 | CU914524.3 | 74867 | 75517 | 1 | AC233501.1 | 12497 | 13142 |