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Table 4 Statistics on UniProtKB-based annotations.

From: SolEST database: a "one-stop shop" approach to the study of Solanaceae transcriptomes

Unique transcripts with matches in UniProt

SOURCE

CAB

DFCI

PGDB

SGN

SOLLC

28737 (55.82%)

27240 (58.1%)

27763 (56.7%)

20720 (59.4%)

SOLPN

2319 (58.65%)

-

2169 (58.3%)

-

SOLHA

2652 (67.14%)

-

2690 (66.8%)

-

SOLLP

483 (68.71%)

-

-

-

SOLTU

39201 (54.38%)

-

37920 (53.9%)

17122 (55.1%)

SOLCH

4163 (60.19%)

-

4062 (57.1%)

 

TOBAC

45647 (41.5%)

30958 (37.26%)

46618 (40.83%)

33415 (39.5%)

NICBE

8108 (43.15%)

7631 (47.32%)

8564 (47.48%)

7239 (45.18%)

NICSY

3930 (52.3%)

-

4030 (52.9%)

3512 (55.7%)

NICAT

177 (46.09%)

-

-

-

NICLS

3116 (49.09%)

 

3391 (49.9%)

-

CAPAN

8457 (52.83%)

7947 (55.7%)

8454 (55.3)%

5723 (59.90%)

CAPCH

311 (73.52%)

-

-

-

PETHY

5041 (53.9%)

4999 (57.27%)

5474 (55.3%)

2967 (57.7%)

COFCA

9896 (51.14%)

9464 (53.6%)

10697 (53.0%)

8316 (52.9%)

COFAR

701 (49.79%)

-

530 (48.49%)

-

  1. The table shows the number of sequences with significant matches to the UniProtKB/Swiss-prot database and, in brackets, the corresponding percentage on the total.
  2. Source: SOLLC: S. lycopersicum; SOLPN: S. pennellii; SOLHA: S. habrochaites; SOLLP: S. lycopersicum × S. pimpinellifolium; SOLTU: S. tuberosum; SOLCH: S. chacoense; TOBAC: N. tabacum; NICBE: N. benthamiana; NICSY: N. sylvestris; NICAT: N. attenuata; NICLS: N. langsdorffii × N. sanderae; CAPAN: C. annuum; CAPCH: C. chinense; PETHY: Petunia × hybrida; COFCA: C. canephora; COFAR: C. arabica.CAB: Computer Aided Bioscience group http://cab.unina.it collection; DFCI: The DFGI Gene Index Project http://compbio.dfci.harvard.edu/tgi/; PGDB: Plant Genome Database http://www.plantgdb.org/; SGN: The unigene collection at Solanaceae Genomics Network http://www.sgn.cornell.edu/).