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Table 1 The SolEST database statistics.

From: SolEST database: a "one-stop shop" approach to the study of Solanaceae transcriptomes

Source # ESTs EST length # mRNA # mRNA length # Cluster # TCs TC length # ESTs in TCs # sESTs SEST length # Unique transcripts
SOLLC 259990 522.47 ± 156.39 5770 1377.23 ± 735.42 17001 20548 1019.43 ± 544.69 234297 30937 491.07 ± 246.90 51485
SOLPN 8346 460.38 ± 129.80 13 1854 ± 974.32 817 844 666.91 ± 265.85 5249 3110 470.86 ± 165.38 3954
SOLHA 8000 617.39 ± 165.42 30 864.07 ± 537.43 1119 1243 900.79 ± 342.79 5323 2707 561.14 ± 171.26 3950
SOLLP 1008 352.89 ± 133.45 - - 103 109 478.06 ± 151.54 413 594 342.03 ± 136.70 703
RNA 231275 611.41 ± 205.52 1704 1144.24 ± 663.38 18590 23453 983.56 ± 429.02 184233 48630 627.26 ± 236.38 72083
SOLCH 7752 812.65 ± 152.46 60 1008.97 ± 533.89 632 637 845.18 ± 266.09 1513 6279 824.93 ± 154.44 6916
TOBAC 240440 601.54 ± 231.81 3605 795.75 ± 805.60 24274 28571 934.99 ± 423.1 158264 81247 565.44 ± 262.19 109818
NICBE 42566 611.86 ± 243.81 301 1260.82 ± 1379.73 4452 5006 984.41 ± 443.85 29051 13784 505.82 ± 299.38 18790
NICSY 8583 381.48 ± 168.21 94 1577.17 ± 1125.60 662 674 457.99 ± 437.09 1838 6831 400.25 ± 209.85 7505
NICAT 329 303.60 ± 152.31 94 1239.71 ± 726.51 32 32 949.5 ± 775.84 68 352 461.88 ± 463.58 384
NICLS 12448 492.11 ± 205.98 95 831.58 ± 456.42 1268 1379 651.89 ± 252.34 7570 4969 467.14 ± 215.44 6348
CAPAN 33311 466.73 ± 154.98 564 974.95 ± 587.75 4082 4293 760.45 ± 331.46 22144 11714 460.65 ± 194.94 16007
CAPCH 372 464.35 ± 228.64 105 1072.8 ± 642.35 32 34 901.97 ± 490.54 86 389 572.65 ± 446.71 423
PETHY 14017 500.50 ± 185.75 323 1254.12 ± 724.09 1627 1738 704.4 ± 308.88 6642 7612 520.40 ± 268.87 9350
COFCA 55694 613.87 ± 174.08 100 1158.32 ± 643.76 6141 6620 863.97 ± 325.59 42873 12732 548.20 ± 181 19352
COFAR 1577 413.29 ± 149.78 150 725.25 ± 534.10 129 137 644.16 ± 333.3 455 1271 421.38 ± 207.41 1408
  925708   13008   80961 925708   700019 233158   328476
  1. Source: SOLLC: S. lycopersicum; SOLPN: S. pennellii; SOLHA: S. habrochaites; SOLLP: S. lycopersicum × S. pimpinellifolium; SOLTU: S. tuberosum; SOLCH: S. chacoense; TOBAC: N. tabacum; NICBE: N. benthamiana; NICSY: N. sylvestris; NICAT: N. attenuata; NICLS: N. langsdorffii × N. sanderae; CAPAN: C. annuum; CAPCH: C. chinense; PETHY: Petunia × hybrida; COFCA: C. canephora; COFAR: C. arabica. #ESTs: number of raw ESTs from dbEST; EST length: average length and standard deviation; #mRNA: number of mRNA from GenBank;mRNA length: average length and standard deviation; #cluster: number of clusters created by grouping overlapping EST sequences; #TCs: number of tentative consensuses which are generated from multiple sequence alignments of ESTs (assembling process); TC length: average length and standard deviation; #ESTs in TCs: number of ESTs assembled to generate TCs; #sESTs:number of singleton ESTs; sESTs length: average length and standard deviation;#Unique transcripts: number of total transcripts obtained adding the sESTs to the TCs.