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Table 1 The SolEST database statistics.

From: SolEST database: a "one-stop shop" approach to the study of Solanaceae transcriptomes

Source

# ESTs

EST length

# mRNA

# mRNA length

# Cluster

# TCs

TC length

# ESTs in TCs

# sESTs

SEST length

# Unique transcripts

SOLLC

259990

522.47 ± 156.39

5770

1377.23 ± 735.42

17001

20548

1019.43 ± 544.69

234297

30937

491.07 ± 246.90

51485

SOLPN

8346

460.38 ± 129.80

13

1854 ± 974.32

817

844

666.91 ± 265.85

5249

3110

470.86 ± 165.38

3954

SOLHA

8000

617.39 ± 165.42

30

864.07 ± 537.43

1119

1243

900.79 ± 342.79

5323

2707

561.14 ± 171.26

3950

SOLLP

1008

352.89 ± 133.45

-

-

103

109

478.06 ± 151.54

413

594

342.03 ± 136.70

703

RNA

231275

611.41 ± 205.52

1704

1144.24 ± 663.38

18590

23453

983.56 ± 429.02

184233

48630

627.26 ± 236.38

72083

SOLCH

7752

812.65 ± 152.46

60

1008.97 ± 533.89

632

637

845.18 ± 266.09

1513

6279

824.93 ± 154.44

6916

TOBAC

240440

601.54 ± 231.81

3605

795.75 ± 805.60

24274

28571

934.99 ± 423.1

158264

81247

565.44 ± 262.19

109818

NICBE

42566

611.86 ± 243.81

301

1260.82 ± 1379.73

4452

5006

984.41 ± 443.85

29051

13784

505.82 ± 299.38

18790

NICSY

8583

381.48 ± 168.21

94

1577.17 ± 1125.60

662

674

457.99 ± 437.09

1838

6831

400.25 ± 209.85

7505

NICAT

329

303.60 ± 152.31

94

1239.71 ± 726.51

32

32

949.5 ± 775.84

68

352

461.88 ± 463.58

384

NICLS

12448

492.11 ± 205.98

95

831.58 ± 456.42

1268

1379

651.89 ± 252.34

7570

4969

467.14 ± 215.44

6348

CAPAN

33311

466.73 ± 154.98

564

974.95 ± 587.75

4082

4293

760.45 ± 331.46

22144

11714

460.65 ± 194.94

16007

CAPCH

372

464.35 ± 228.64

105

1072.8 ± 642.35

32

34

901.97 ± 490.54

86

389

572.65 ± 446.71

423

PETHY

14017

500.50 ± 185.75

323

1254.12 ± 724.09

1627

1738

704.4 ± 308.88

6642

7612

520.40 ± 268.87

9350

COFCA

55694

613.87 ± 174.08

100

1158.32 ± 643.76

6141

6620

863.97 ± 325.59

42873

12732

548.20 ± 181

19352

COFAR

1577

413.29 ± 149.78

150

725.25 ± 534.10

129

137

644.16 ± 333.3

455

1271

421.38 ± 207.41

1408

 

925708

 

13008

 

80961

925708

 

700019

233158

 

328476

  1. Source: SOLLC: S. lycopersicum; SOLPN: S. pennellii; SOLHA: S. habrochaites; SOLLP: S. lycopersicum × S. pimpinellifolium; SOLTU: S. tuberosum; SOLCH: S. chacoense; TOBAC: N. tabacum; NICBE: N. benthamiana; NICSY: N. sylvestris; NICAT: N. attenuata; NICLS: N. langsdorffii × N. sanderae; CAPAN: C. annuum; CAPCH: C. chinense; PETHY: Petunia × hybrida; COFCA: C. canephora; COFAR: C. arabica. #ESTs: number of raw ESTs from dbEST; EST length: average length and standard deviation; #mRNA: number of mRNA from GenBank;mRNA length: average length and standard deviation; #cluster: number of clusters created by grouping overlapping EST sequences; #TCs: number of tentative consensuses which are generated from multiple sequence alignments of ESTs (assembling process); TC length: average length and standard deviation; #ESTs in TCs: number of ESTs assembled to generate TCs; #sESTs:number of singleton ESTs; sESTs length: average length and standard deviation;#Unique transcripts: number of total transcripts obtained adding the sESTs to the TCs.
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BMC Plant Biology

ISSN: 1471-2229

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