MM | MM.good | Manual selection | |
---|---|---|---|
Number of contigs (CAP3) | 1,546 | 1,546 | 653 |
SNP selection criterion (occurrence) | all SNPs | at least 2 times | more than 2 times |
Number of SNPs containing contigs | 1,417 | 255 | 64 |
Total number of SNP detected | 43,656 | 1,886 | 294 |
Average SNP frequency in contigs | 30.8 (1/25 bp) | 7.4 (1/105 bp) | 4.6 (1/198 bp) |