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Table 5 Association between SNPs and dieback resistance in a set of 68 L. sativa accessions.

From: Association mapping and marker-assisted selection of the lettuce dieback resistance gene Tvr1

Marker

SNP position

p-value

R2 %

Tagged SNPs

LK1457

137

0.00008

29.2

513

 

224

0.00001

48.7

235, 236, 251

 

318

0.00037

25.9

482

Cntg10044

9

0.00470

19.4

 
 

27

0.00022

24.8

 
 

109*

0.00001

32.3

 
 

170**

0.00300

20.1

 
 

337

0.00085

22.5

 
 

733

0.00001

33.9

 

QGG19E03

27

0.00001

53.9

46, 525, 574, 594

 

355

0.00130

33.0

393, 415, 480, 597, 598

Cntg4252

472

0.00420

22.6

480, 486, 489, 490. 492, 493, 499, 544, 577

Cntg10192

72

0.00001

100.0

54

 

100

0.00001

40.9

 

CLSM9959

77

0.00001

38.0

 
 

242

0.00210

22.7

 

CLSZ1525

84

0.00498

19.4

100, 102, 144, 236, 250, 258, 279, 309, 399, 400, 402, 457, 464, 483

 

89

0.00001

48.6

107, 110, 116, 123, 149, 181, 296

 

465

0.00001

33.2

 
 

VNTR***

0.00001

48.8

 

QGC11N03

42

0.00010

29.8

 
 

50

0.00001

45.0

 
 

448

0.00001

50.4

 

Cntg11275

7

0.00001

42.5

 
 

431

0.00001

38.0

525, 534, 559, 583, 590, 748, 798, 799

 

623

0.00031

27.4

661, 685, 742, 766, 767

  1. Columns indicate markers, SNP position in the marker, the p-value of association, the percent of phenotypic variation explained by the SNP (R2 %), and SNPs from the same tag. SNPs with a p-value of ≤ 0.005 are shown, but only those with p ≤ 0.001 are considered to be significant. *, **, and *** denote indel, SFP, and Variable Number of Tandem Repeats (respectively).