Skip to main content

Advertisement

Table 5 Association between SNPs and dieback resistance in a set of 68 L. sativa accessions.

From: Association mapping and marker-assisted selection of the lettuce dieback resistance gene Tvr1

Marker SNP position p-value R2 % Tagged SNPs
LK1457 137 0.00008 29.2 513
  224 0.00001 48.7 235, 236, 251
  318 0.00037 25.9 482
Cntg10044 9 0.00470 19.4  
  27 0.00022 24.8  
  109* 0.00001 32.3  
  170** 0.00300 20.1  
  337 0.00085 22.5  
  733 0.00001 33.9  
QGG19E03 27 0.00001 53.9 46, 525, 574, 594
  355 0.00130 33.0 393, 415, 480, 597, 598
Cntg4252 472 0.00420 22.6 480, 486, 489, 490. 492, 493, 499, 544, 577
Cntg10192 72 0.00001 100.0 54
  100 0.00001 40.9  
CLSM9959 77 0.00001 38.0  
  242 0.00210 22.7  
CLSZ1525 84 0.00498 19.4 100, 102, 144, 236, 250, 258, 279, 309, 399, 400, 402, 457, 464, 483
  89 0.00001 48.6 107, 110, 116, 123, 149, 181, 296
  465 0.00001 33.2  
  VNTR*** 0.00001 48.8  
QGC11N03 42 0.00010 29.8  
  50 0.00001 45.0  
  448 0.00001 50.4  
Cntg11275 7 0.00001 42.5  
  431 0.00001 38.0 525, 534, 559, 583, 590, 748, 798, 799
  623 0.00031 27.4 661, 685, 742, 766, 767
  1. Columns indicate markers, SNP position in the marker, the p-value of association, the percent of phenotypic variation explained by the SNP (R2 %), and SNPs from the same tag. SNPs with a p-value of ≤ 0.005 are shown, but only those with p ≤ 0.001 are considered to be significant. *, **, and *** denote indel, SFP, and Variable Number of Tandem Repeats (respectively).