From: Genome scale transcriptome analysis of shoot organogenesis in Populus
B vs. A | C vs. A | D vs. A | E vs. A | ||||||
---|---|---|---|---|---|---|---|---|---|
GO category | Function category | Up | Down | Up | Down | Up | Down | Up | Down |
Biological Process | response to stress | 1.8 | 1.8 | 2.1 | 1.7 | 2.3 | 1.6 | 2.3 | 1.8 |
cell organization and biogenesis | 1.6 | 1.2 | 1.1 | 1.2 | 1 | 1.3 | 1 | 1.3 | |
response to abiotic or biotic stimulus | 1.5 | 2 | 1.8 | 2 | 1.9 | 1.8 | 1.8 | 1.9 | |
developmental processes | 1.5 | 1.3 | 1.4 | 1.4 | 1.3 | 1.6 | 1.5 | 1.6 | |
other metabolic processes | 1.3 | 1.2 | 1.3 | 1.2 | 1.4 | 1.1 | 1.4 | 1.1 | |
other cellular processes | 1.3 | 1.2 | 1.3 | 1.2 | 1.3 | 1.2 | 1.3 | 1.1 | |
protein metabolism | 1.3 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | |
electron transport or energy pathways | 1.2 | 1.8 | 1.5 | 1.7 | 1.6 | 1 | 1.6 | 1.1 | |
transport | 1.1 | 1.2 | 1.1 | 1.2 | 1.1 | 1.4 | 1.1 | 1.3 | |
DNA or RNA metabolism | 1.1 | 0.4 | 0.6 | 0.5 | 0.6 | 0.6 | 0.6 | 0.6 | |
other biological processes | 0.9 | 0.9 | 0.9 | 0.9 | 0.9 | 1 | 0.9 | 1 | |
signal transduction | 0.9 | 1.4 | 1 | 1.4 | 1.1 | 1.6 | 0.9 | 1.8 | |
transcription | 0.8 | 1.1 | 1 | 1.1 | 1 | 1.3 | 1 | 1.4 | |
Cellular Component | ribosome | 2.8 | 0.9 | 0.9 | 1 | 1.1 | 0.2 | 1.5 | 0.2 |
cytosol | 2.8 | 1.1 | 2.1 | 1.1 | 2.3 | 0.9 | 2.8 | 1 | |
mitochondria | 2.6 | 0.9 | 1.9 | 0.8 | 1.9 | 0.8 | 1.8 | 0.7 | |
cell wall | 2.2 | 0.9 | 2 | 1.2 | 2.1 | 1.3 | 2.5 | 1.3 | |
other cytoplasmic components | 2 | 2.1 | 1.4 | 1.9 | 1.5 | 1.2 | 1.6 | 1 | |
ER | 2 | 0.2 | 2.1 | 0.5 | 2.1 | 0.8 | 2.4 | 0.4 | |
other intracellular components | 1.6 | 1.6 | 1 | 1.4 | 1 | 1.1 | 1.1 | 1 | |
Golgi apparatus | 1.3 | 1.2 | 0.7 | 1.5 | 0.7 | 2 | 0.4 | 1.8 | |
nucleus | 1.1 | 1.1 | 1.2 | 1.1 | 1 | 1.3 | 1 | 1.3 | |
plasma membrane | 1.1 | 1.9 | 1.3 | 2.3 | 1.4 | 2.5 | 1.1 | 2.6 | |
other cellular components | 1 | 1 | 0.9 | 0.9 | 0.9 | 0.9 | 0.9 | 0.9 | |
chloroplast | 1 | 2.5 | 0.9 | 2.1 | 1 | 1.2 | 1.1 | 1.2 | |
other membranes | 0.9 | 1.2 | 1.1 | 1.3 | 1.2 | 1.2 | 1.1 | 1.1 | |
plastid | 0.9 | 4.9 | 0.9 | 3.9 | 1 | 1.4 | 1.1 | 1.2 | |
extracellular | 0.8 | 0.6 | 1.1 | 0.8 | 1.2 | 0.7 | 1.4 | 0.5 | |
Molecular Function | structural molecule activity | 2.2 | 1.4 | 0.7 | 1.3 | 0.9 | 0.8 | 1.2 | 0.8 |
other enzyme activity | 1.8 | 1.3 | 2 | 1.3 | 2.2 | 1 | 2.2 | 1 | |
nucleotide binding | 1.7 | 0.9 | 1.4 | 1.1 | 1.3 | 1.2 | 1.2 | 1.2 | |
nucleic acid binding | 1.6 | 0.9 | 1.2 | 0.9 | 0.9 | 0.9 | 1 | 0.9 | |
transferase activity | 1.5 | 1.2 | 1.9 | 1.2 | 1.8 | 1.3 | 1.9 | 1.3 | |
transporter activity | 1.4 | 1.3 | 1.4 | 1.4 | 1.4 | 1.6 | 1.4 | 1.6 | |
hydrolase activity | 1.4 | 1.1 | 1.3 | 1.2 | 1.2 | 1.1 | 1.4 | 1.1 | |
kinase activity | 1.1 | 1.3 | 1.4 | 1.4 | 1.4 | 1.7 | 1.2 | 1.8 | |
DNA or RNA binding | 1 | 1 | 0.9 | 0.9 | 0.9 | 1 | 0.8 | 1.1 | |
protein binding | 1 | 1.3 | 1 | 1.3 | 0.9 | 1.5 | 0.8 | 1.6 | |
transcription factor activity | 0.8 | 1.4 | 1 | 1.5 | 1.1 | 1.7 | 1.1 | 1.8 | |
other binding | 0.8 | 1 | 0.8 | 0.9 | 0.8 | 0.9 | 0.7 | 0.9 | |
other molecular functions | 0.7 | 0.8 | 0.7 | 0.8 | 0.7 | 0.8 | 0.6 | 0.8 | |
receptor binding or activity | 0.5 | 0.7 | 0.7 | 0.6 | 0.6 | 0.6 | 0.6 | 0.7 |