Table 1 DNA motifs discovered in the promoters of plant seed-storage protein genes
Plant family | Motif ID | q-value | PLACE ID | STAMP alignment | Evalue |
|---|---|---|---|---|---|
Brassicaceae | B1 | 1.60e-07 | RYREPEATBNNAPA | MKCCATGCAAAN ---CATGCA--- | 5.02-08 |
| Â | B2 | 5.45e-04 | GADOWNAT | AYKTGTCACYCY ACGTGTC----- | 6.86e-08 |
| Â | B3 | 1.84e-02 | RYREPEATBNNAPA | NYWCATGCANNY ---CATGCA--- | 9.68e-08 |
Fabaceae | F1 | 1.43e-07 | LEGUMINBOXLEGA5 | NNRCCATGCATR TAGCCATGCAWR | 4.73e-12 |
| Â | F2 | 2.06-03 | RYREPEATLEGUMINBOX | RNNCATGCANNN ---CATGCAY-- | 1.05e-09 |
| Â | F3 | 7.24e-03 | TATABOX1 | TMNCTATAAATA ---CTATAAATA | 1.58e-12 |
| Â | F4 | 9.05e-03 | E2FBNTRNR | KAMGCGGCNAMN ---GCGGCAAA- | 9.03e-05 |
| Â | F5 | 4.53e-02 | ACGTSEED2 | NSACWCNTCMWY ACACACGTCAA- | 1.32e-08 |
Poaceae | P1 | 6.84e-08 | GLMHVCHORD | KRTGAGTCATNN -RTGASTCAT-- | 1.52e-13 |
| Â | P2 | 2.17e-05 | PROLAMINBOXOSGLUB1 | ANNTTGCAAAMN ----TGCAAAG- | 4.41e-06 |
| Â | P3 | 1.85e-04 | EMHVCHORD | NYRTAAAGTNNW -TGTAAAGT--- | 6.45e-11 |
| Â | P4 | 2.94e-03 | TATABOX1 | NANCTATAAAWR ---CTATAAATA | 6.12e-10 |
| Â | P5 | 9.17e-03 | BIHD1OS | KNTTGTCATNTW ---TGTCA---- | 6.65e-06 |
| Â | P6 | 1.14e-02 | GCAACREPEATZMZEIN | NMWAAAGCAANN -GCAACGCAAC- | 5.47e-03 |
| Â | P7 | 2.82e-02 | O2F3BE2S1 | WNNACATRCWWR TCCACGTACT-- | 1.55e-05 |