Table 3 Species-specific statistics for Gossypium SNPs and indels.
Species | N | Loci with SNPs | Number of SNPs | Loci with SNPs (%)1 | SNPs/locus1 | bp/SNP1,2 | Loci with indels | Number of indels | Loci with indels (%)1 | Indels/locus1 | Bases/indel1,2 |
|---|---|---|---|---|---|---|---|---|---|---|---|
G. arboreum | 1 | 149 | 238 | 19.8 | 0.3 | 2,546 | 34 | 67 | 2.1 | 0.1 | 9,046 |
G. raimondii | 1 | 142 | 379 | 18.9 | 0.5 | 1,599 | 29 | 66 | 1.8 | 0.1 | 9,183 |
G. hirsutum 3 | 16 | 124 | 245 | 16.5 | 0.3 | 2,474 | 70 | 161 | 4.4 | 0.2 | 3,764 |
G. barbadense | 3 | 208 | 439 | 27.7 | 0.6 | 1,381 | 48 | 117 | 3.0 | 0.2 | 5,180 |
G. mustelinum | 1 | 182 | 432 | 24.2 | 0.6 | 1,403 | 42 | 94 | 2.6 | 0.1 | 6,447 |
G. tomentosum | 1 | 156 | 382 | 20.8 | 0.5 | 1,587 | 34 | 84 | 2.1 | 0.1 | 7,215 |
Total | 24 | 270 | 1,005 | 36.0 | 1.3 | 603 | 92 | 279 | 5.8 | 0.4 | 2,172 |