Skip to main content

Table 2 Germplasm panel sequenced for SNP or indel discovery.

From: Sampling nucleotide diversity in cotton

Line1

Genome

Description

CMD panel

Pool2

Acala Maxxa

[AD]1

California Upland cotton and BAC donor

Yes

Pool 2, 3

AHA 6-1-4

[AD]1

Upland cotton

  

Auburn 623RNR

[AD]1

Upland cotton

  

Coker 312

[AD]1

Upland cotton

  

Deltatype Webber

[AD]1

Upland cotton

  

DPL 458BR

[AD]1

Upland cotton

Yes

Pool 1

Fibermax 832

[AD]1

Upland cotton

Yes

Pool 1

Paymaster 1218BR

[AD]1

Upland cotton

Yes

 

PD-1

[AD]1

Upland cotton

 

Pool 2

Sealand 542

[AD]1

Upland cotton

 

Pool 1

Stoneville 20

[AD]1

Upland cotton

  

Stoneville 4892BR

[AD]1

Upland cotton

Yes

Pool 1

Tamcot Sphinx

[AD]1

Upland cotton

 

Pool 2

Tidewater Seabrooks

[AD]1

Upland cotton

  

TM-1

[AD]1

Genetic standard (BAC donor/RI parent)

Yes

Pool 3

Wilt Acala 1517

[AD]1

California Upland cotton

  

TX 2094

[AD]1

G. hirsutum race yucatanense

 

Pool 2

3-79

[AD]2

Genetic standard (fiber QTLs/RI parent)

Yes

Pool 3

Pima S-6

[AD]2

Pima germplasm breeding source

Yes

 

Pima S-7

[AD]2

Pima germplasm breeding source

 

Pool 3

G. tomentosum

[AD]3

Introgression breeding source

Yes

 

G. mustelinum

[AD]4

Introgression breeding source

Yes

 

G. arboreum

A2-8

A-genome species representative

Yes

 

G. raimondii

D5-3

D-genome species representative

Yes

 
  1. 1All 12 members of the Cotton Marker Database Panel were included [13]
  2. 2Pools of 4 lines representing cotton germplasm were used to screen primer sets (see Materials and Methods)