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Table 2 List of MAPMAN "BINs" showing evidence for differential expression

From: Improper excess light energy dissipation in Arabidopsis results in a metabolic reprogramming

    npq4 – wt npq4 – oe oe – wt High exp in
BIN name elem. p-value p-value p-value  
1 PS 104 0.624 0.000 0.000 oePsbS
1.1 PS lightreaction 60 0.522 0.000 0.000 oePsbS
1.1.1 PS lightreaction photosystem II 26 0.205 0.002 0.381  
1.1.1.2 PS lightreaction photosystem II PSII polypeptide subunits 20 0.232 0.019 0.525 oePsbS
1.1.2 PS lightreaction photosystem I 13 0.982 0.019 0.016 oePsbS
1.1.2.2 PS lightreaction photosystem I PSIpolypeptide subunits 9 0.981 0.094 0.089 oePsbS
1.3 PS calvin cyle 27 0.819 0.009 0.005 oePsbS
2 major CHO metabolism 82 0.536 0.086 0.604 npq4
3.1.2 minor CHO metabolism raffinose family raffinose synthases 4 0.439 0.089 0.465 npq4
6 gluconeogenese/glyoxylate cycle 11 0.188 0.092 0.979  
16 secondary metabolism 266 0.065 0.272 0.992  
17.7 hormone metabolism jasmonate 18 0.053 0.053 0.631 npq4
17.7.1 hormone metabolism jasmonate synthesis-degradation 9 0.065 0.089 0.758 npq4
19 tetrapyrrole synthesis 26 0.188 0.066 0.840 oePsbS
26.19 misc plastocyanin-like 24 0.365 0.012 0.586  
29.2 protein synthesis 318 0.163 0.001 0.465 oePsbS
29.2.1 protein synthesis chloroplast/mito – plastid ribosomal protein 50 0.050 0.030 0.525 oePsbS
29.2.1.1 protein synthesis chloroplast/mito – plastid ribosomal protein plastid 24 0.229 0.010 0.378 oePsbS
29.5 protein degradation 1178 0.065 0.086 0.667  
34 Transport 646 0.557 0.030 0.301 npq4
34.13 transport peptides and oligopeptides 36 0.540 0.086 0.599 npq4
35.1.5 not assigned no ontology pentatricopeptide (PPR) repeat 322 0.188 0.010 0.254 oePsbS
  1. List of MAPMAN "BINs" showing evidence for differential expression. Only "BINs" with p-values < 0.10, after Benjamini-Hochberg-correction, in npq4 vs. wild-type, npq4 vs. oePsbS (oe) or wild-type vs. oePsbS (oe) comparisons are listed. P-values < 0.05 in bold. Classes without informative annotations (like "Not assigned") are excluded. "High exp in" shows the direction of the change; oePsbS means that the BIN had higher expression in that genotype. Number of element (elem.) is number of genes in that category.